2024/02/02 更新

写真a

タケタ シン
武田 真
TAKETA Shin
所属
資源植物科学研究所 教授
職名
教授
外部リンク

学位

  • 博士(農学) ( 1992年11月   京都大学 )

研究キーワード

  • Plant genetics and breeding

  • 植物遺伝育種学

研究分野

  • 環境・農学 / 遺伝育種科学

所属学協会

  • 日本植物生理学会

    2021年1月 - 現在

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  • 日本育種学会

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論文

  • Genomic traces of Japanese malting barley breeding in two modern high-quality cultivars, ‘Sukai Golden’ and ‘Sachiho Golden’ 査読

    Shin Taketa, June-Sik Kim, Hidekazu Takahashi, Shunsuke Yajima, Yuichi Koshiishi, Toshinori Sotome, Tsuneo Kato, Keiichi Mochida

    Breeding Science   73 ( 5 )   2023年12月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:Japanese Society of Breeding  

    DOI: 10.1270/jsbbs.23031

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  • Molecular identification of a laccase that catalyzes the oxidative coupling of a hydroxycinnamic acid amide for hordatine biosynthesis in barley 査読

    Naoki Ube, Atsushi Ishihara, Yukinori Yabuta, Shin Taketa, Yasuo Kato, Taiji Nomura

    The Plant Journal   2023年5月

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    掲載種別:研究論文(学術雑誌)   出版者・発行元:Wiley  

    DOI: 10.1111/tpj.16278

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  • A bifurcated palea mutant infers functional differentiation of WOX3 genes in flower and leaf morphogenesis of barley 査読

    Takanori Yoshikawa, Hiroshi Hisano, Ken-Ichiro Hibara, Jilu Nie, Yuki Tanaka, Jun-Ichi Itoh, Shin Taketa

    AoB PLANTS   14 ( 3 )   2022年6月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:Oxford University Press (OUP)  

    Abstract

    Barley (Hordeum vulgare) is the fourth most highly produced cereal in the world after wheat, rice and maize and is mainly utilized as malts and for animal feed. Barley, a model crop of the tribe Triticeae, is important in comparative analyses of Poaceae. However, molecular understanding about the developmental processes is limited in barley. Our previous work characterized one of two WUSCHEL-RELATED HOMEOBOX 3 (WOX3) genes present in the barley genome: NARROW LEAFED DWARF1 (NLD1). We demonstrated that NLD1 plays a pivotal role in the development of lateral organs. In the present study, we describe a bifurcated palea (bip) mutant of barley focusing on flower and leaf phenotypes. The palea in the bip mutant was split into two and develop towards inside the lemma surrounding the carpels and anthers. The bip mutant is devoid of lodicules, which develop in a pair at the base of the stamen within the lemma in normal barley. bip also exhibited malformations in leaves, such as narrow leaf due to underdeveloped leaf-blade width, and reduced trichome density. Map-based cloning and expression analysis indicated that BIP is identical to another barley WOX3 gene, named HvWOX3. The bip nld1 double mutant presented a more severe reduction in leaf-blade width and number of trichomes. By comparing the phenotypes and gene expression patterns of various WOX3 mutants, we concluded that leaf bilateral outgrowth and trichome development are promoted by both NLD1 and HvWOX3, but that HvWOX3 serves unique and pivotal functions in barley development that differ from those of NLD1.

    DOI: 10.1093/aobpla/plac019

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    その他リンク: https://academic.oup.com/aobpla/article-pdf/14/3/plac019/43934060/plac019.pdf

  • Regulation of the plastochron by three many-noded dwarf genes in barley 査読

    Ken-Ichiro Hibara, Masayuki Miya, Sean Akira Benvenuto, Naoko Hibara-Matsuo, Manaki Mimura, Takanori Yoshikawa, Masaharu Suzuki, Makoto Kusaba, Shin Taketa, Jun-ichi Itoh

    PLOS GENETICS   17 ( 5 )   2021年5月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:PUBLIC LIBRARY SCIENCE  

    Author summaryThe number of leaves produced during a plant's lifetime is major determinant of plant architecture and affects the efficiency of photosynthesis and crop productivity. The leaf number is dependent on the temporal pattern of leaf initiation at the shoot apical meristem, which is termed the plastochron. The genetic factors involved in plastochron regulation have been identified in several plant species. However, whether the functions of plastochron-related genes and their genetic pathways are universal or diversified among different plant species is unclear. In this study, we investigated many-noded dwarf (mnd) mutants in barley, which exhibited a shortened plastochron and a decreased leaf blade length. The mutant alleles used in this study were derived from three genes, MND4, MND1, and MND8, which encode a cytochrome P450 family protein, an N-acetyltransferase-like protein, and a MATE transporter-family protein, respectively. Phenotypic and expression analyses revealed that these three MND genes affect the leaf production rate and leaf maturation program, but their expression levels were interdependent. In addition, the plastochron and leaf growth are closely related but independently regulated. We also analyzed the expression patterns and knockout mutants of rice MND orthologs to clarify whether their biological functions are conserved in rice and barley. This study provides insight into the genetic mechanisms of plastochron control in grass species.The plastochron, the time interval between the formation of two successive leaves, is an important determinant of plant architecture. We genetically and phenotypically investigated many-noded dwarf (mnd) mutants in barley. The mnd mutants exhibited a shortened plastochron and a decreased leaf blade length, and resembled previously reported plastochron1 (pla1), pla2, and pla3 mutants in rice. In addition, the maturation of mnd leaves was accelerated, similar to pla mutants in rice. Several barley mnd alleles were derived from three genes-MND1, MND4, and MND8. Although MND4 coincided with a cytochrome P450 family gene that is a homolog of rice PLA1, we clarified that MND1 and MND8 encode an N-acetyltransferase-like protein and a MATE transporter-family protein, which are respectively orthologs of rice GW6a and maize BIGE1 and unrelated to PLA2 or PLA3. Expression analyses of the three MND genes revealed that MND1 and MND4 were expressed in limited regions of the shoot apical meristem and leaf primordia, but MND8 did not exhibit a specific expression pattern around the shoot apex. In addition, the expression levels of the three genes were interdependent among the various mutant backgrounds. Genetic analyses using the double mutants mnd4mnd8 and mnd1mnd8 indicated that MND1 and MND4 regulate the plastochron independently of MND8, suggesting that the plastochron in barley is controlled by multiple genetic pathways involving MND1, MND4, and MND8. Correlation analysis between leaf number and leaf blade length indicated that both traits exhibited a strong negative association among different genetic backgrounds but not in the same genetic background. We propose that MND genes function in the regulation of the plastochron and leaf growth and revealed conserved and diverse aspects of plastochron regulation via comparative analysis of barley and rice.

    DOI: 10.1371/journal.pgen.1009292

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  • Identification of methoxylchalcones produced in response to CuCl2 treatment and pathogen infection in barley 査読

    Naoki Ube, Yuhka Katsuyama, Keisuke Kariya, Shin-ichi Tebayashi, Masayuki Sue, Takuji Tohnooka, Kotomi Ueno, Shin Taketa, Atsushi Ishihara

    PHYTOCHEMISTRY   184   2021年4月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:PERGAMON-ELSEVIER SCIENCE LTD  

    Changes in specialized metabolites were analyzed in barley (Hordeum vulgare) leaves treated with CuCl2 solution as an elicitor. LC-MS analysis of the CuCl2-treated leaves showed the induced accumulation of three compounds. Among them, two were purified by silica gel and ODS column chromatography and preparative HPLC and were identified as 2',3,4,4',6'-pentamethoxychalcone and 2'-hydroxy-3,4,4',6'-tetramethoxychalcone by spectroscopic analyses. The remaining compound was determined as 12-oxo-phytodienoic acid (OPDA), a major oxylipin in plants, by comparing its spectrum and retention time from LC-MS/MS analysis with those of the authentic compound. The accumulation of these compounds was reproduced in leaves inoculated with Bipolaris sorokiniana, the causal agent of spot blotch of the Poaceae species. This inoculation increased the amounts of other oxylipins, including jasmonic acid (JA), JA-Ile, 9-oxooctadeca-10,12-dienoic acid (9-KODE), and 13-oxooctadeca-9,11-dienoic acid (13-KODE). The treatments of the barley leaves with JA and OPDA induced the accumulation of methoxylchalcones, but treatment with 9-KODE did not. These methoxylchalcones inhibited conidial germination of B. sorokiniana and Fusarium graminearum, thereby indicating that these compounds possessed antifungal activity. Consequently, they are considered to be involved in the chemical defense processes as phytoalexins in barley. Accumulation of methoxylchalcones in response to JA treatment was observed in all seven barley cultivars tested, but was not detected in other wild Hordeum species, wheat, and rice, thus indicating that their production was specific to cultivated barley.

    DOI: 10.1016/j.phytochem.2020.112650

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  • Mutations in a Golden2-Like Gene Cause Reduced Seed Weight in Barley albino lemma 1 Mutants 査読

    Shin Taketa, Momoko Hattori, Tsuneaki Takami, Eiko Himi, Wataru Sakamoto

    PLANT AND CELL PHYSIOLOGY   62 ( 3 )   447 - 457   2021年3月

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    担当区分:筆頭著者, 責任著者   記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:OXFORD UNIV PRESS  

    The albino lemma 1 (alm1) mutants of barley (Hordeum vulgare L.) exhibit obvious chlorophyll-deficient hulls. Hulls are seed-enclosing tissues on the spike, consisting of the lemma and palea. The alm1 phenotype is also expressed in the pericarp, culm nodes and basal leaf sheaths, but leaf blades and awns are normal green. A single recessive nuclear gene controls tissue-specific alm1 phenotypic expression. Positional cloning revealed that the ALM1 gene encodes a Golden 2-like (GLK) transcription factor, HvGLK2, belonging to the GARP subfamily of Myb transcription factors. This finding was validated by genetic evidence indicating that all 10 alm1 mutants studied had a lesion in functionally important regions of HvGLK2, including the three alpha-helix domains, an AREAEAA motif and the GCT box. Transmission electron microscopy revealed that, in lemmas of the alm1.g mutant, the chloroplasts lacked thylakoid membranes, instead of stacked thylakoid grana in wild-type chloroplasts. Compared with wild type, alm1.g plants showed similar levels of leaf photosynthesis but reduced spike photosynthesis by 34%. The alm1.g mutant and the alm1.a mutant showed a reduction in 100-grain weight by 15.8% and 23.1%, respectively. As in other plants, barley has HvGLK2 and a paralog, HvGLK1. In flag leaves and awns, HvGLK2 and HvGLK1 are expressed at moderate levels, but in hulls, HvGLK1 expression was barely detectable compared with HvGLK2. Barley alm1/Hvglk2 mutants exhibit more severe phenotypes than glk2 mutants of other plant species reported to date. The severe alm1 phenotypic expression in multiple tissues indicates that HvGLK2 plays some roles that are nonredundant with HvGLK1.

    DOI: 10.1093/pcp/pcab001

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  • Phylogenetic analysis of the Si7PPO gene in foxtail millet, Setaria italica, provides further evidence for multiple origins of the negative phenol color reaction phenotype. 査読

    Kenji Fukunaga, Meili Zakiyah Nur, Takahiko Inoue, Shin Taketa, Katsuyuki Ichitani

    Genes & genetic systems   95 ( 4 )   191 - 199   2020年10月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)  

    To elucidate the diversity and evolution of the Si7PPO gene that controls phenol color reaction (Phr) in foxtail millet, Setaria italica, we analyzed sequence polymorphisms of the Si7PPO gene in 39 accessions consisting of foxtail millet landraces (32 accessions) and their wild ancestor ssp. viridis (seven accessions) collected from various regions in Europe and Asia. The accessions included wild type (positive Phr) and three different types of loss-of-function phenotype (negative Phr), "stop codon type", "TE1-insertion type" and "6-bp duplication type", found in our previous study. We constructed a phylogenetic tree of the gene and found that accessions with positive Phr showed higher genetic diversity at the nucleotide sequence level. We also found that the three different loss-of-function types formed different clusters, suggesting that landraces with negative Phr have multiple origins from three different lineages including both landrace and ssp. viridis accessions with positive Phr.

    DOI: 10.1266/ggs.20-00011

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  • Biosynthesis of Phenylamide Phytoalexins in Pathogen-Infected Barley 査読

    Naoki Ube, Yukinori Yabuta, Takuji Tohnooka, Kotomi Ueno, Shin Taketa, Atsushi Ishihara

    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES   20 ( 22 )   2019年11月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:MDPI  

    Phytoalexins are inducible antimicrobial metabolites in plants, and have been indicated to be important for the rejection of microbial infection. HPLC analysis detected the induced accumulation of three compounds 1-3 in barley (Hordeum vulgare) roots infected by Fusarium culmorum, the causal agent of Fusarium root rot. Compounds 1-3 were identified as cinnamic acid amides of 9-hydroxy-8-oxotryptamine, 8-oxotryptamine, and (1H-indol-3-yl)methylamine, respectively, by spectroscopic analysis. Compounds 1 and 2 had been previously reported from wheat, whereas 3 was an undescribed compound. We named 1-3 as triticamides A-C, respectively, because they were isolated from barley and wheat, which belong to the Triticeae tribe. These compounds showed antimicrobial activities, indicating that triticamides function as phytoalexins in barley. The administration of deuterium-labeled N-cinnamoyl tryptamine (CinTry) to barley roots resulted in the effective incorporation of CinTry into 1 and 2, which suggested that they were synthesized through the oxidation of CinTry. Nine putative tryptamine hydroxycinnamoyl transferase (THT)-encoding genes (HvTHT1-HvTHT9) were identified by database search on the basis of homology to known THT gene sequences from rice. Since HvTHT7 and HvTHT8 had the same sequences except one base, we measured their expression levels in total by RT-qPCR. HvTHT7/8 were markedly upregulated in response to infection by F. culmorum. The HvTHT7 and HvTHT8 enzymes preferred cinnamoyl- and feruloyl-CoAs as acyl donors and tryptamine as an acyl acceptor, and (1H-indol-3-yl)methylamine was also accepted as an acyl acceptor. These findings suggested that HvTHT7/8 are responsible for the induced accumulation of triticamides in barley.

    DOI: 10.3390/ijms20225541

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  • Identification of phenylamide phytoalexins and characterization of inducible phenylamide metabolism in wheat 査読

    Naoki Ube, Daiyu Harada, Yuhka Katsuyama, Kumiko Osaki-Oka, Takuji Tonooka, Kotomi Ueno, Shin Taketa, Atsushi Ishihara

    PHYTOCHEMISTRY   167   2019年11月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:PERGAMON-ELSEVIER SCIENCE LTD  

    Changes in specialized metabolites were analyzed in wheat leaves inoculated with Bipolaris sorokiniana, the causal agent of spot blotch of Poaceae species. HPLC analysis detected the accumulation of six compounds in B. sorokiniana-infected leaves. Of these, we purified two compounds by silica gel and ODS column chromatography and preparative HPLC, and identified them as cinnamic acid amides, N-cinnamoyl-9-hydroxy-8-oxotryptamine and N-cinnamoyl-8-oxotryptamine, by spectroscopic analyses. The remaining four compounds were predicted to be p-coumaric acid amides of hydroxyputrescine, hydroxyagmatine, hydroxydehydroagmatine, and agmatine by mass spectrometry. The accumulation of two cinnamic acid amides was also induced by Fusarium graminearum infection, and by treatment with CuCl2, jasmonic acid, and isopentenyladenine. Antifungal activity of these amides was shown by inhibition of conidial germination and germ tube elongation of F. graminearum and Alternaria brassicicola, indicating that they act as phytoalexins. The accumulation of these amides also detected in barley leaves treated with CuCl2. We examined the accumulation of 25 phenylamides in B. sorokiniana-infected wheat leaves using LC-MS/MS. Hydroxycinnamic acid amides of tryptamine, serotonin, putrescine, and agmatine, were induced after infection with B. sorokiniana. Thus, the induced accumulation of two groups of phenylamides, cinnamic acid amides with indole amines, and p-coumaric acid amides with putrescine and agmatine related amines, represents a major metabolic response of wheat to pathogen infection.

    DOI: 10.1016/j.phytochem.2019.112098

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  • Genebank genomics highlights the diversity of a global barley collection 査読

    Sara G. Milner, Matthias Jost, Shin Taketa, Elena Rey Mazon, Axel Himmelbach, Markus Oppermann, Stephan Weise, Helmut Knuepffer, Martin Basterrechea, Patrick Koenig, Danuta Schueler, Rajiv Sharma, Raj K. Pasam, Twan Rutten, Ganggang Guo, Dongdong Xu, Jing Zhang, Gerhard Herren, Thomas Mueller, Simon G. Krattinger, Beat Keller, Yong Jiang, Maria Y. Gonzalez, Yusheng Zhao, Antje Habekuss, Sandra Faerber, Frank Ordon, Matthias Lange, Andreas Boerner, Andreas Graner, Jochen C. Reif, Uwe Scholz, Martin Mascher, Nils Stein

    NATURE GENETICS   51 ( 2 )   319 - +   2019年2月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:NATURE RESEARCH  

    Genebanks hold comprehensive collections of cultivars, landraces and crop wild relatives of all major food crops, but their detailed characterization has so far been limited to sparse core sets. The analysis of genome-wide genotyping-by-sequencing data for almost all barley accessions of the German ex situ genebank provides insights into the global population structure of domesticated barley and points out redundancies and coverage gaps in one of the world's major genebanks. Our large sample size and dense marker data afford great power for genome-wide association scans. We detect known and novel loci underlying morphological traits differentiating barley genepools, find evidence for convergent selection for barbless awns in barley and rice and show that a major-effect resistance locus conferring resistance to bymovirus infection has been favored by traditional farmers. This study outlines future directions for genomics-assisted genebank management and the utilization of germplasm collections for linking natural variation to human selection during crop evolution.

    DOI: 10.1038/s41588-018-0266-x

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  • Evolutionary changes in defensive specialized metabolism in the genus Hordeum 査読

    Naoki Ube, Miho Nishizaka, Tsuyoshi Ichiyanagi, Kotomi Ueno, Shin Taketa, Atsushi Ishihara

    PHYTOCHEMISTRY   141   1 - 10   2017年9月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:PERGAMON-ELSEVIER SCIENCE LTD  

    Plants have developed defensive specialized metabolites over the course of evolution. In the genus Hordeum, which includes the important cereal crop barley, specialized metabolites such as hordatines, benzoxazinones, and gramine have been identified. Hordeum species are classified into four clades, H, Xu, Xa, and I. The presence or absence of defensive specialized metabolites was analyzed in representative Hordeum species that included all of the four clades. In the H Glade, Hordeum vulgare accumulated hordatines but not benzoxazinones, whereas H. bulbosum accumulated neither compound. Some accessions in the H Glade accumulated gramine. Species in the clades I and Xa accumulated benzoxazinones without hordatines. In H. murinum, a Xu Glade species, neither hordatines nor benzoxazinones were detected. Two hitherto undescribed compounds were found to commonly accumulate in H. bulbosum in the H Glade and H. murinum in the Xu Glade. On the basis of spectroscopic analyses, they were identified as dehydrodimers of feruloylagmatine and were designated murinamides A and B. Radical coupling reactions with feruloylagmatine as a substrate by peroxidase afforded murinamides A and B. These compounds showed antifungal activities against Bipolaris sorokiniana and Fusarium asiaticum, indicating their defensive roles. Because hordatines are also dehydrodimers of hydroxycinnamic acid amides (HCAAs) of agmatine, both the H and Xu Glade species are considered to accumulate the same class of compounds. Thus, when the H/Xu clades split from the I/Xa clades during evolution, the defensive metabolites shifted from benzoxazinones to dehydrodimers of agmatine HCAAs plus gramine in the H/Xu clades. (C) 2017 Elsevier Ltd. All rights reserved.

    DOI: 10.1016/j.phytochem.2017.05.004

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  • Distribution of the tryptophan pathway-derived defensive secondary metabolites gramine and benzoxazinones in Poaceae 査読

    Yu Kokubo, Miho Nishizaka, Naoki Ube, Yukinori Yabuta, Shin-ichi Tebayashi, Kotomi Ueno, Shin Taketa, Atsushi Ishihara

    BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY   81 ( 3 )   431 - 440   2017年3月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:TAYLOR & FRANCIS LTD  

    The Poaceae is a large taxonomic group consisting of approximately 12,000 species and is classified into 12 subfamilies. Gramine and benzoxazinones (Bxs), which are biosynthesized from the tryptophan pathway, are well-known defensive secondary metabolites in the Poaceae. We analyzed the presence or absence of garamine and Bxs in 64 species in the Poaceae by LC-MS/MS. We found that Hordeum brachyantherum and Hakonechloa macra accumulated gramine, but the presence of gramine was limited to small groups of species. We also detected Bxs in four species in the Pooideae and six species in the Panicoideae. In particular, four species in the Paniceae tribe in Panicoideae accumulaed Bxs, indicating that this tribe is a center of the Bx distribution. Bxs were absent in the subfamilies other than Pooideae and Panicoideae. These findings provide an overview of biased distribution of gramine and Bxs in Poaceae species.

    DOI: 10.1080/09168451.2016.1256758

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  • Barley NARROW LEAFED DWARF1 encoding a WUSCHEL-RELATED HOMEOBOX 3 (WOX3) regulates the marginal development of lateral organs 査読

    Takanori Yoshikawa, Shin-Ya Tanaka, Yuuki Masumoto, Naoya Nobori, Hiroto Ishii, Ken-Ichiro Hibara, Jun-Ichi Itoh, Takatoshi Tanisaka, Shin Taketa

    BREEDING SCIENCE   66 ( 3 )   416 - 424   2016年6月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:JAPANESE SOC BREEDING  

    Barley (Hordeum vulgare L.) is the fourth most-produced cereal in the world and is mainly utilized as animal feed and malts. Recently barley attracts considerable attentions as healthy food rich in dietary fiber. However, limited knowledge is available about developmental aspects of barley leaves. In the present study, we investigated barley narrow leafed dwarf1 (nld1) mutants, which exhibit thin leaves accompanied by short stature. Detailed histological analysis revealed that leaf marginal tissues, such as sawtooth hairs and sclerenchymatous cells, were lacked in nld1, suggesting that narrowed leaf of nld1 was attributable to the defective development of the marginal regions in the leaves. The defective marginal developments were also appeared in internodes and glumes in spikelets. Map-based cloning revealed that NLD1 encodes a WUSCHEL-RELATED HOMEOBOX 3 (WOX3), an ortholog of the maize NARROW SHEATH genes. In situ hybridization showed that NLD1 transcripts were localized in the marginal edges of leaf primordia from the initiating stage. From these results, we concluded that NLD1 plays pivotal role in the increase of organ width and in the development of marginal tissues in lateral organs in barley.

    DOI: 10.1270/jsbbs.16019

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  • Isolation of candidate genes for the barley Ant1 and wheat Rc genes controlling anthocyanin pigmentation in different vegetative tissues 査読

    Eiko Himi, Shin Taketa

    MOLECULAR GENETICS AND GENOMICS   290 ( 4 )   1287 - 1298   2015年8月

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    担当区分:最終著者   記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:SPRINGER HEIDELBERG  

    MYB transcription factors exist in a large copy number and control various plant phenotypes. We cloned R2R3 MYB-type transcription factors that determine the coloration of basal sheaths in barley and wheat coleoptiles. These genes are highly homologous to maize C1 and rice OsC1, regulators for anthocyanin biosynthesis, but they control seed pigmentation in maize and rice. On the basis of high homology, barley and wheat counterparts are designated HvC1 and TaC1, respectively. HvC1 gene is located on the short arm of chromosome 7H, and TaC1 genes are located on the short arms of chromosomes 7A, 7B, and 7D (TaC1-A1, B1, and D1, respectively). HvC1 is a strong candidate for Ant1 because of (1) complete co-segregation of anthocyanin pigmentation phenotype of the basal sheath with the HvC1 genotype in genetic mapping, and (2) complete deletion of the HvCl gene in two anthocyanin-decreased allelic mutants (ant1.1 and ant1.2) that were induced by irradiation. In contrast, colorless coleoptile wheat lines had lesions in all three genomes consisting of a single-nucleotide substitution or a 1-bp deletion of TaC1-A1, a 1.7-kb insertion of TaC1-B1, and a 2.0-kb insertion of TaC1-D1. At least one normal TaC1 gene appears to be sufficient to produce anthocyanin pigments in wheat coleoptiles. Previous crossing experiments localized Rc (red coleoptile) genes to homoeologous group 7 chromosomes and deduced Rc genotypes of several wheat lines. Their TaC1 gene sequence variation coincided with deduced Rc genotypes; therefore, the present molecular genetic study demonstrates that TaC1 is a strong candidate for Rc in wheat.

    DOI: 10.1007/s00438-015-0991-0

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  • Multiple origins of the phenol reaction negative phenotype in foxtail millet, Setaria italica (L.) P. Beauv., were caused by independent loss-of-function mutations of the polyphenol oxidase (Si7PPO) gene during domestication 査読

    Takahiko Inoue, Takahisa Yuo, Takeshi Ohta, Eriko Hitomi, Katsuyuki Ichitani, Makoto Kawase, Shin Taketa, Kenji Fukunaga

    MOLECULAR GENETICS AND GENOMICS   290 ( 4 )   1563 - 1574   2015年8月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:SPRINGER HEIDELBERG  

    Foxtail millet shows variation in positive phenol color reaction (Phr) and negative Phr in grains, but predominant accessions of this crop are negative reaction type, and the molecular genetic basis of the Phr reaction remains unresolved. In this article, we isolated polyphenol oxidase (PPO) gene responsible for Phr using genome sequence information and investigated molecular genetic basis of negative Phr and crop evolution of foxtail millet. First of all, we searched for PPO gene homologs in a foxtail millet genome database using a rice PPO gene as a query and successfully found three copies of the PPO gene. One of the PPO gene homologs on chromosome 7 showed the highest similarity with PPO genes expressed in hulls (grains) of other cereal species including rice, wheat, and barley and was designated as Si7PPO. Phr phenotypes and Si7PPO genotypes completely co-segregated in a segregating population. We also analyzed the genetic variation conferring negative Phr reaction. Of 480 accessions of the landraces investigated, 87 (18.1 %) showed positive Phr and 393 (81.9 %) showed negative Phr. In the 393 Phr negative accessions, three types of loss-of-function Si7PPO gene were predominant and independently found in various locations. One of them has an SNP in exon 1 resulting in a premature stop codon and was designated as stop codon type, another has an insertion of a transposon (Si7PPO-TE1) in intron 2 and was designated as TE1-insertion type, and the other has a 6-bp duplication in exon 3 resulting in the duplication of 2 amino acids and was designated as 6-bp duplication type. As a rare variant of the stop codon type, one accession additionally has an insertion of a transposon, Si7PPO-TE2, in intron 2 and was designated as "stop codon +TE2 insertion type". The geographical distribution of accessions with positive Phr and those with three major types of negative Phr was also investigated. Accessions with positive Phr were found in subtropical and tropical regions at frequencies of ca. 25-67 % and those with negative Phr were broadly found in Europe and Asia. The stop codon type was found in 285 accessions and was broadly distributed in Europe and Asia, whereas the TE-1 insertion type was found in 99 accessions from Europe and Asia but was not found in India. The 6-bp duplication type was found in only 8 accessions from Nansei Islands (Okinawa Prefecture) of Japan. We also analyzed Phr in the wild ancestor and concluded that the negative Phr type was likely to have originated after domestication of foxtail millet. It was also implied that negative Phr of foxtail millet arose by multiple independent loss of function of PPO gene through dispersal because of some advantages under some environmental conditions and human selection as in rice and barley.

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  • Real-time PCR-mediated diagnosis of hemizygosity at the Tamyb10-D1 locus controlling grain color in wheat 査読

    Himi Eiko, Maekawa Masahiko, Matsuura Takakazu, Taketa Shin

    MOLECULAR BREEDING   35 ( 3 )   2015年3月

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  • Barley Ant17, encoding flavanone 3-hydroxylase (F3H), is a promising target locus for attaining anthocyanin/proanthocyanidin-free plants without pleiotropic reduction of grain dormancy. 査読

    Himi E, Taketa S

    Genome   58 ( 1 )   43 - 53   2015年1月

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  • Ant28 gene for proanthocyanidin synthesis encoding the R2R3 MYB domain protein (Hvmyb10) highly affects grain dormancy in barley 査読

    Himi Eiko, Yamashita Yuko, Haruyama Naoto, Yanagisawa Takashi, Maekawa Masahiko, Taketa Shin

    EUPHYTICA   188 ( 1 )   141 - 151   2012年11月

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    担当区分:最終著者   記述言語:英語   掲載種別:研究論文(学術雑誌)  

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  • A SHORT INTERNODES (SHI) family transcription factor gene regulates awn elongation 1 and pistil morphology in barley 査読 国際誌

    Takahisa Yuo, Yuko Yamashita, Hiroyuki Kanamori, Takashi Matsumoto, Udda Lundqvist, Kazuhiro Sato, Masahiko Ichii, Stephen A. Jobling, Shin Taketa

    Journal of Experimental Botany   63 ( 14 )   5223 - 32   2012年9月

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    担当区分:最終著者, 責任著者   記述言語:英語  

    DOI: 10.1093/jxb/ers182

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  • Functional characterization of barley betaglucanless mutants demonstrates a unique role for CslF6 in (1,3;1,4)-beta-D-glucan biosynthesis 査読

    Shin Taketa, Takahisa Yuo, Takuji Tonooka, Yoichi Tsumuraya, Yoshiaki Inagaki, Naoto Haruyama, Oscar Larroque, Stephen A. Jobling

    JOURNAL OF EXPERIMENTAL BOTANY   63 ( 1 )   381 - 392   2012年1月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:OXFORD UNIV PRESS  

    (1,3;1,4)-beta-D-glucans (mixed-linkage glucans) are found in tissues of members of the Poaceae (grasses), and are particularly high in barley (Hordeum vulgare) grains. The present study describes the isolation of three independent (1,3;1,4)-beta-D-glucanless (betaglucanless; bgl) mutants of barley which completely lack (1,3;1,4)-beta-D-glucan in all the tissues tested. The bgl phenotype cosegregates with the cellulose synthase like HvCslF6 gene on chromosome arm 7HL. Each of the bgl mutants has a single nucleotide substitution in the coding region of the HvCslF6 gene resulting in a change of a highly conserved amino acid residue of the HvCslF6 protein. Microsomal membranes isolated from developing endosperm of the bgl mutants lack detectable (1,3;1,4)-beta-D-glucan synthase activity indicating that the HvCslF6 protein is inactive. This was confirmed by transient expression of the HvCslF6 cDNAs in Nicotiana benthamiana leaves. The wild-type HvCslF6 gene directed the synthesis of high levels of (1,3;1,4)-beta-D-glucans, whereas the mutant HvCslF6 proteins completely lack the ability to synthesize (1,3;1,4)-beta-D-glucans. The fine structure of the (1,3;1,4)-beta-D-glucan produced in the tobacco leaf was also very different from that found in cereals having an extremely low DP3/DP4 ratio. These results demonstrate that, among the seven CslF and one CslH genes present in the barley genome, HvCslF6 has a unique role and is the key determinant controlling the biosynthesis of (1,3;1,4)-beta-D-glucans. Natural allelic variation in the HvCslF6 gene was found predominantly within introns among 29 barley accessions studied. Genetic manipulation of the HvCslF6 gene could enable control of (1,3;1,4)-beta-D-glucans in accordance with the purposes of use.

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  • Root hairless 2 (rth2) mutant represents a loss-of-function allele of the cellulose synthase-like gene OsCSLD1 in rice (Oryza sativa L.) 査読

    Yuo Takahisa, Shiotani Kenji, Shitsukawa Naoki, Miyao Akio, Hirochika Hirohiko, Ichii Masahiko, Taketa Shin

    BREEDING SCIENCE   61 ( 3 )   225 - 233   2011年9月

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    記述言語:英語   出版者・発行元:Japanese Society of Breeding  

    DOI: 10.1270/jsbbs.61.225

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  • Expression and functional analysis of the barley Nud gene using transgenic rice 査読

    Katsuyuki Kakeda, Norimitsu Ishihara, Yohei Izumi, Kazuhiro Sato, Shin Taketa

    BREEDING SCIENCE   61 ( 1 )   35 - 42   2011年3月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:JAPANESE SOC BREEDING  

    Most cereal crops have hulless grains (naked caryopses) with a free-threshing trait, whereas the majority of barley cultivars show hulled (covered) caryopses. The naked caryopsis in barley is genetically controlled by a single locus, nod. The Nud gene (the covered caryopsis allele) encodes an ethylene response factor (ERF) family transcription factor that regulates a lipid biosynthetic pathway. For functional analysis of the barley Nud gene, we produced transgenic rice expressing Nod in the developing caryopses. All transgenic lines had caryopses that were easily dehulled at maturity, indicating that the naked caryopsis phenotype remained in spite of expression of the Nod transgene. Histochemical and lipid analyses of the transgenic rice caryopses did not show increased lipid accumulation on the surface of developing caryopses, suggesting that the Nud-mediated lipid pathway may not function in rice caryopses. The predicted rice ortholog of Nod, Os06ERF was expressed specifically in the developing caryopses. However, expression of Os06ERF ceased at an earlier developmental stage than that of the native Nod gene in barley caryopses, which was also the case for expression of the Nod transgene. This raises the alternative hypothesis that the timing of Nod expression may be critical for activating the pathway for hull-caryopsis adhesion.

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  • Molecular mapping of the short awn 2 (lks2) and dense spike 1 (dsp1) genes on barley chromosome 7H 査読

    Shin Taketa, Takahisa Yuo, Yukie Sakurai, Shoko Miyake, Masahiko Ichii

    BREEDING SCIENCE   61 ( 1 )   80 - 85   2011年3月

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    担当区分:筆頭著者, 責任著者   記述言語:英語   出版者・発行元:JAPANESE SOC BREEDING  

    The short awn 2 (lks2) and dense spike 1 (dsp1) genes are unique to East Asian barley. These two spike-related morphological genes are important because they may be involved in stable production and local adaptation. As a first step of their positional cloning, molecular mapping was conducted in 98 F-2 plants derived from a cross between Karafuto Zairai and Aizu Hadaka 3. The dsp1 gene was mapped to the proximal region of the short arm of chromosome 7H. The lks2 gene was located on the long arm of 7H and flanked by EST-based markers k04151 and k06123, with distances of 0.5 cM in the proximal side and 1.0 cM in the distal side. Both k04151 and k06123 shared homology to rice genes on chromosome 6 that were separated with the physical distance of 5.6 Mbp. In this interval, rice barley microsynteny was exploited for marker enrichment. Of 57 rice genes attempted, 15 (26.3%) yielded polymorphic EST-based markers. Breakdown of collinearity was found in the candidate region of lks2, suggesting occurrence of structural changes in the chromosome region harboring lks2 during divergence of barley and rice from a common ancestor.

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  • Duplicate polyphenol oxidase genes on barley chromosome 2H and their functional differentiation in the phenol reaction of spikes and grains 査読

    Shin Taketa, Kanako Matsuki, Satoko Amano, Daisuke Saisho, Eiko Himi, Naoki Shitsukawa, Takahisa Yuo, Kazuhiko Noda, Kazuyoshi Takeda

    JOURNAL OF EXPERIMENTAL BOTANY   61 ( 14 )   3983 - 3993   2010年9月

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    担当区分:筆頭著者, 責任著者   記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:OXFORD UNIV PRESS  

    Polyphenol oxidases (PPOs) are copper-containing metalloenzymes encoded in the nucleus and transported into the plastids. Reportedly, PPOs cause time-dependent discoloration (browning) of end-products of wheat and barley, which impairs their appearance quality. For this study, two barley PPO homologues were amplified using PCR with a primer pair designed in the copper binding domains of the wheat PPO genes. The full-lengths of the respective PPO genes were cloned using a BAC library, inverse-PCR, and 3'-RACE. Linkage analysis showed that the polymorphisms in PPO1 and PPO2 co-segregated with the phenol reaction phenotype of awns. Subsequent RT-PCR experiments showed that PPO1 was expressed in hulls and awns, and that PPO2 was expressed in the caryopses. Allelic variation of PPO1 and PPO2 was analysed in 51 barley accessions with the negative phenol reaction of awns. In PPO1, amino acid substitutions of five types affecting functionally important motif(s) or C-terminal region(s) were identified in 40 of the 51 accessions tested. In PPO2, only one mutant allele with a precocious stop codon resulting from an 8 bp insertion in the first exon was found in three of the 51 accessions tested. These observations demonstrate that PPO1 is the major determinant controlling the phenol reaction of awns. Comparisons of PPO1 single mutants and the PPO1PPO2 double mutant indicate that PPO2 controls the phenol reaction in the crease on the ventral side of caryopses. An insertion of a hAT-family transposon in the promoter region of PPO2 may be responsible for different expression patterns of the duplicate PPO genes in barley.

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  • Molecular phylogeny of the genus Hordeum using thioredoxin-like gene sequences

    Katsuyuki Kakeda, Shin Taketa, Takao Komatsuda

    BREEDING SCIENCE   59 ( 5 )   595 - 601   2009年12月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:JAPANESE SOC BREEDING  

    Phylogenetic relationships within the genus Hordeum were investigated based on nucleotide sequences of the thioredoxin-like (HTL) gene. We analyzed amplified genomic DNA fragments of the HTL gene from I I Hordeum species including 16 taxa (25 accessions), which cover mainly diploid accessions together with several tetraploid accessions. Phylogenetic analysis based on the HTL sequences demonstrated a clear divergence of the four basic genomes I (H. vulgare and H. bulbosum), Xa (H. marinum), Xu (H. marinum) and H (other species) in the genus. Phylogenetic clustering also led us to infer two separate clades, one containing the I and Xu, and the other containing the Xa and H genomes. In the diploid H-genome species, American species were confirmed to be closely related and divergent from Asian species. Analysis of the Xa-genome group suggested an alloploid origin of tetraploid H. marinum ssp. gussoneanum by hybridization between the diploid cytotypes of ssp. marinum and ssp. gussoneanum. Our data also supported the hypothesis that two tetraploid cytotypes of H. marinum (ssp. marinum and ssp. leporinum) have an alloploid origin, where one genome was presumably derived from the diploid cytotype ssp. glaucum and the other from an unknown Xu-genome species.

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  • Analysis of the rice SHORT-ROOT5 gene revealed functional diversification of plant neutral/alkaline invertase family 査読

    Shan-Guo Yao, Rumi Kodama, Hua Wang, Masahiko Ichii, Shin Taketa, Hitoshi Yoshida

    PLANT SCIENCE   176 ( 5 )   627 - 634   2009年5月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:ELSEVIER IRELAND LTD  

    Neutral/alkaline invertase (Inv-N) catalyzes the hydrolysis of sucrose to produce glucose and fructose. Although the rice genome contains eight Inv-N-like genes, their functions in plant development are unknown. We previously described a rice mutant, srt5, which exhibits extremely stunted postembryonic root growth that is rescuable by metabolizable sugars. In the present study, we performed a functional analysis of the SRT5 gene. We showed that SRT5 encodes a putative cytosolic Inv-N that cleaves sucrose at pH 7.0 and 8.0. An SRT5-GFP fusion protein was localized to the cytosol. Sucrose levels in srt5 root cells were elevated, consistent with a crucial role for SRT5 in cytosolic sucrose cleavage at early root developmental stages. SRT5 was found to be ubiquitously expressed in various plant organs, whereas the other seven rice Inv-Ns were differentially expressed, suggesting that the functions of these latter proteins are distinct from that of SRT5. In support of this view, molecular evolutionary analysis revealed that all of the most closely related paralogs of SRT5 (OsNIN5, OsNIN6, and OsNIN7) have multiple non-conservative amino acid substitutions not found in SRT5. These results suggest that SRT5 is the key isoform of Inv-Ns required for carbon and energy supply during early root development. (C) 2009 Elsevier Ireland Ltd. All rights reserved.

    DOI: 10.1016/j.plantsci.2009.02.002

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  • Molecular cloning of a root hairless gene rth1 in rice 査読

    Takahisa Yuo, Masanori Toyota, Masahiko Ichii, Shin Taketa

    Breeding Science   59 ( 1 )   13-20 - 20   2009年3月

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    担当区分:最終著者, 責任著者   記述言語:英語   出版者・発行元:日本育種学会  

    Root hairs, projections from the epidermal cells of the roots, are contributing to water and nutrient uptake and anchorage to the soil. To better understand genetic control of root hair formation in rice, we analyzed root hairless 1 (rth1) mutant that was induced by NaN_3 treatment. SEM observation showed that in rth1 plants, root hair elongation was abolished after the formation of bulge. High-resolution mapping using 2,088 segregants revealed three predicted genes in a 38-kb candidate interval on chromosome 7. Sequences comparison of the three genes between wild-type Oochikara and rth1 detected a nucleotide substitution only in apyrase (OsAPY). This nucleotide substitution (G→A) lies in the junction between the third intron and the forth exon, and results in the splicing anomaly to the rth1 cDNA sequence. Transgenic plants with introduced OsAPY allele restored normal root hairs and plant growth, showing a complementation of rth1 phenotype. We concluded that the root hairless phenotype of rth1 is caused by a mutation of OsAPY. OsAPY appears to be an important gene for root hair elongation and plant growth in rice.

    DOI: 10.1270/jsbbs.59.13

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  • A novel mutant gene for (1-3, 1-4)-β-D-glucanless grain on barley (Hordeum vulgare L.) chromosome 7H

    Tonooka Takuji, Aoki Emiko, Yoshioka Toji, Taketa Shin

    Breeding science   59 ( 1 )   47 - 54   2009年3月

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    記述言語:英語   出版者・発行元:日本育種学会  

    (1-3, 1-4)-β-D-glucan contained in barley (Hordeum vulgare L.) grains is a main component of endosperm cell walls and constitutes the cell wall matrix with arabinoxylan. A monofactorial recessive mutant gene for (1-3, 1-4)-β-D-glucanless grain was found and the new gene was designated as bgl (=(1-3, 1-4)-beta-D-glucanless grain). A linkage was found between the bgl gene and the naked caryopsis (nud) gene, and it was mapped to the centromeric region of chromosome 7H. Phenotypes in bgl cosegregated with the polymorphisms in HvCslF6, a member of cellulose synthase-like HvCslF gene family, indicating that bgl was caused by a mutation in the HvCslF6 locus. In order to clarify the characteristics of (1-3, 1-4)-β-D-glucanless barley grains, a near-isogenic line (NIL) was developed by backcrossing the Japanese two-rowed cultivar 'Nishinohoshi' as a recurrent parent. The NIL with bgl completely lacked (1-3, 1-4)-β-D-glucan in both the endosperm and aleurone layer cell walls. Microscopic analysis revealed that the NIL had thin endosperm cell walls. It also showed a softer grain texture and many more broken grains during the pearling process than the recurrent parent. The soft and friable grain texture of the NIL was probably caused by the thin endosperm cell walls.

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  • Barley grain with adhering hulls is controlled by an ERF family transcription factor gene regulating a lipid biosynthesis pathway 査読 国際誌

    S. Taketa, S. Amano, Y. Tsujino, T. Sato, D. Saisho, K. Kakeda, M. Nomura, T. Suzuki, T. Matsumoto, K. Sato, H. Kanamori, S. Kawasaki, K. Takeda

    PNAS   105 ( 10 )   4062 - 7   2008年3月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)  

    DOI: 10.1073/pnas.0711034105

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  • Rice blast disease and susceptibility to pests in a silicon uptake-deficient mutant lsil of rice 査読

    Y. Nakata, M. Uena, J. Kihara, M. Ichii, S. Taketa, S. Arase

    CROP PROTECTION   27 ( 3-5 )   865 - 868   2008年3月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:ELSEVIER SCI LTD  

    To elucidate the role of silicon more clearly in biotic stress such as pests and diseases, a silicon uptake-deficient mutant lsil originating from wild-type rice (cv. Oochikara) was used. When the mutant was grown in a seedling case, silicon did not accumulate in leaves (about 50-80 mg g(-1) dry weight), regardless of the silicon amendment. In the paddy field, however, silicon increased three-fold (373 mg g(-1) dry weight) in leaves with silicon amendment, compared with those (117 mg g(-1) dry weight) with no silicon amendment. Lesion formation by Magnaporthe grisea was significantly suppressed in the leaves of the wild-type plant that had a high accumulation of silicon, but not in the leaves of the mutant that had a low silicon accumulation. Pest resistance was also observed in the leaves of the wild-type plant, but not in the mutant. These results demonstrated that silicon can protect rice plants from damage caused by biotic stresses. (c) 2007 Elsevier Ltd. All rights reserved.

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  • Saturated humidity accelerates lateral root development in rice (Orysa sativa L.) seedlings by increasing phloem- based auxin transport 査読

    Tory Chhun, Yuichi Uno, Shin Taketa, Tetsushi Azuma, Masahiko Ichii, Takashi Okamoto, Seiji Tsurumi

    Journal of Experimental Botany   58 ( 7 )   1695 - 1704   2007年

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:Oxford University Press  

    DOI: 10.1093/jxb/erm026

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  • High-resolution mapping of the nud locus controlling the naked caryopsis in barley 査読

    S. Taketa, T. Awayama, S. Amano, Y. Sakurai, M. Ichii

    PLANT BREEDING   125 ( 4 )   337 - 342   2006年8月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:BLACKWELL PUBLISHING  

    The hulled or naked caryopsis character of barley is an important agronomic trait because of the direct link to its use. A single recessive gene, nud. located on the long arm of chromosome 7H, controls the naked caryopsis character. Previously, linked amplified fragment length polymorphism (AFLP) bands from bulked segregant analysis were screened. and the nud gene was mapped in a population of 151 F, plants. In the present study, the aim was to construct a high-resolution map of the nud gene towards its positional cloning. Two AFLP bands were converted into sequence-characterized amplified region (SCAR) markers (sKT5 and sKT9), and a previously reported SCAR marker sKT3 was improved for more reliable detection of polymorphism. A total of 2380 segregants derived from five cross-combinations were analysed, and the nud gene was flanked by sKT3 and sKT9, at the 0.6-cM proximal and the 0.06-cM distal side, respectively. The SCAR markers developed in this study should be useful for marker-assisted selection in naked barley breeding employing crosses between naked and hulled accessions.

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  • Isolation of a novel lateral-rootless mutant in rice (Oryza sativa L.) with reduced sensitivity to auxin 査読

    WANG H.

    Plant Sci.   170 ( 1 )   70 - 77   2006年

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    掲載種別:研究論文(学術雑誌)  

    DOI: 10.1016/j.plantsci.2005.08.005

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  • 水稲品種オオチカラとその短根性準同質遺伝子系統IL-srt1の生理的特性 査読

    趙 仁貴, 劉 建, 塩津 文隆, 豊田 正範, 楠谷 彰人, 武田 真, 一井 眞比古

    日本作物学会紀事   75 ( 2 )   148 - 152   2006年

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    記述言語:日本語   出版者・発行元:日本作物學會  

    水稲品種オオチカラとその短根性準同質遺伝子系統IL-sr1を供試し、出穂期における地上部と根の形質、出液速度および止葉の光合成関連特性を比較した。IL-sr1の草丈はオオチカラより有意に低く、株当たり茎数と地上部乾物重も有意に少なかったが、茎当たり地上部乾物重に有意差はみられなかった。株当たりの出液速度はIL-sr1の方がオオチカラよりも有意に低く、IL-sr1/オオチカラ比は56%であった。そこで、この差を根量と根量当たり出液速度に分けて検討した。その結果、総根長と総根重のIL-sr1/オオチカラ比は30%と35%、総根長および総根重当たり出液速度の同比はそれぞれ188%と163%であり、いずれにも有意差が認められた。すなわち、根量はオオチカラの方が多く、根量当たり出液速度はIL-sr1の方が高かった。これらより、IL-ssr1は根の量が少ないために根全体の生理機能はオオチカラより低くなったが、個々の根の生理活性はオオチカラを上回っていると推測された。また、光合成関連特性に関してはIL-sr1とオオチカラとの間に有意差は認められず、短根遺伝子sr1は光合成に影響しないと考えられた。

    DOI: 10.1626/jcs.75.148

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  • Involvement of ARM2 in the uptake of indole-3-butyric acid in rice (Oryza sativa L.) roots 査読

    T Chhun, S Taketa, M Ichii, S Tsurumi

    PLANT AND CELL PHYSIOLOGY   46 ( 7 )   1161 - 1164   2005年7月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:OXFORD UNIV PRESS  

    Auxin influx carriers are involved in auxin transport and plant development. Here we show that the mutant of rice (Oryza sativa L. ssp. indica cv 1118) arm(2) is defective in the uptake of the naturally occurring auxin indole-3-butyric acid (IBA). The acropetal and basipetal transport of IBA is reduced in arm2 roots compared with wild type. In contrast, arm2 roots are normal with respect to uptake and transport of indole-3-acetic acid (IAA). Furthermore, arm2 roots are resistant to IBA but respond normally to IAA. The mutant analysis of arm2 indicates the presence of an influx carrier system for IBA in rice roots.

    DOI: 10.1093/pcp/pci117

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  • Ancestry of American polyploid Hordeum species with the I genome inferred from 5S and 18S-25S rDNA 査読

    S Taketa, H Ando, K Takeda, M Ichii, R Von Bothmer

    ANNALS OF BOTANY   96 ( 1 )   23 - 33   2005年7月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:OXFORD UNIV PRESS  

    center dot Background and Aims The genus Hordeum exists at three ploidy levels (2x, 4x and 6x) and presents excellent material for investigating the patterns of polyploid evolution in plants. Here the aim was to clarify the ancestry of American polyploid species with the I genome.
    center dot Methods Chromosomal locations of 5S and 18S-25S ribosomal RNA genes were determined by fluorescence in situ hybridization (FISH). In both polyploid and diploid species, variation in 18S-25S rDNA repeated sequences was analysed by the RFLP technique.
    center dot Key Results Six American tetraploid species were divided into two types that differed in the number of rDNA sites and RFLP profiles. Four hexaploid species were similar in number and location of both types of rDNA sites, but the RFLP profiles of 18S-25S rDNA revealed one species, H. arizonicum, with a different ancestry.
    center dot Conclusions Five American perennial tetraploid species appear to be alloploids having the genomes of an Asian diploid H. roshevitzii and an American diploid species. The North American annual tetraploid H. depressum is probably a segmental alloploid combining the two closely related genomes of American diploid species. A hexaploid species, H. arizonicum, involves a diploid species, H. pusillum, in its ancestry; both species share the annual growth habit and are distributed in North America. Polymorphisms of rDNA sites detected by FISH and RFLP analyses provide useful information to infer the phylogenetic relationships of I-genome Hordeum species because of their highly conserved nature during polyploid evolution.

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  • Defects in root development and gravity response in the aem1 mutant of rice are associated with reduced auxin efflux

    BR Debi, T Chhun, S Taketa, S Tsurumi, K Xia, A Miyao, H Hirochika, M Ichii

    JOURNAL OF PLANT PHYSIOLOGY   162 ( 6 )   678 - 685   2005年6月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:URBAN & FISCHER VERLAG  

    The phytohormone auxin is involved in the regulation of a variety of developmental. processes. In this report, we describe how the processes of lateral root and root hair formations and root gravity response in rice are controlled by auxin. We use a rice mutant aem1 (auxin efflux mutant) because the mutant is defective in these characters. The aem1 tine was originally isolated as a short lateral root mutant, but we found that the mutant has a defect in auxin efflux in roots. The acropetal and basipetal indote-3-acetic acid (IAA) transports were reduced in aem1 roots compared to wild type (WT). Furthermore, gravitropic bending as well as efflux of radioactive IAA was impaired in the mutant roots. We also propose a unique distribution of endogenous IAA in aem1 roots. An immunoassay revealed a 4-fold-endogenous IAA content in the aem1 roots compared to WT, and the application of IAA to the shoot of WT seedlings mimicked the short lateral root phenotype of aem1, suggesting that the high content of IAA in aem1 roots impaired the elongation of lateral roots. However, the high level of IAA in aeml roots contradicts the auxin requirement for root hair formation in the epidermis of mutant roots. Since the reduced development in root hairs of aeml roots was rescued by exogenous auxin, the auxin level in the epidermis is likely to be sub-optimum in aem1 roots. This discrepancy can be solved by the ideas that IAA level is higher in the stele and lower in the epidermis of aem1 roots compared to WT and that the unique distribution of IAA in aem1 roots is induced by the defect in auxin efflux. All these results suggest that AEM1 may encode a component of auxin efflux carrier in rice and that the defects in lateral roots, root hair formation and root gravity response in aem1 mutant are due to the altered auxin efflux in roots. (c) 2005 Elsevier GrnbH. All rights reserved.

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  • Cytokinin inhibits lateral root initiation but stimulates lateral root elongation in rice (Oryza sativa)

    BR Debi, S Taketa, M Ichii

    JOURNAL OF PLANT PHYSIOLOGY   162 ( 5 )   507 - 515   2005年5月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:URBAN & FISCHER VERLAG  

    Research in lateral root (LR) development mainly focuses on the role of auxin. This article reports the effect of cytokinins (kinetin and trans-zeatin) on LR formation in rice (Oryza sativa L.). Our results showed that cytokinin has an inhibitory effect on LR initiation and stimulatory effect on LR elongation. Both KIN and ZEA at a concentration of 1 mu M and above completely inhibited lateral root primordium (LRP) formation. The inhibitory effect of cytokinin on LR initiation required a continuous presence of KIN or ZEA in the growth solution. Cytokinin did not show any inhibitory effect on LR emergence from the seminal root once LRPs had been formed. The LRPs that developed in cytokinin-free solution can emerge normally in the solution containing inhibitory concentration (1 mu M) of KIN and ZEA. The KIN and ZEA treatment dramatically stimulated LR elongation at all the concentrations tested. Maximum LR elongation was observed at a concentration of 0.01 mu M KIN and 0.001 mu M ZEA. The epidermal cell length increased significantly in LRs of cytokinin treated seedlings compared to those of untreated control. This result indicates that the stimulation of LR elongation by cytokinin is due to increased cell length. Exogenously applied auxin counteracted the effect of cytokinin on LR initiation and LR elongation, suggesting that cytokinin acts on LR elongation through an auxin dependent pathway. (c) 2004 Elsevier GmbH. All rights reserved.

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  • Molecular cytogenetic identification of nullisomy 5B induced homoeologous recombination between wheat chromosome 5D and barley chromosome 5H

    S Taketa, T Awayama, M Ichii, M Sunakawa, T Kawahara, K Murai

    GENOME   48 ( 1 )   115 - 124   2005年2月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:CANADIAN SCIENCE PUBLISHING, NRC RESEARCH PRESS  

    Chromosome 5H of Hordeum vulgare 'New Golden' (NG) carries a gene(s) that accelerates heading in a wheat background. To introduce the early heading gene(s) of NG barley into the wheat genome, we attempted to induce homoeologous recombination between wheat and NG 5H chromosomes by 5B nullisomy. A nullisomic 5B, trisomic 5A, monosomic 5H plant (2n = 42) was produced from systematic crosses between aneuploid stocks of wheat group 5 chromosomes. A total of 656 F-2 plants produced by self-fertilization were screened for recombinants by a PCR assay with 3 5H-specific amplicon markers. Twelve plants (1.8%) were selected as putative wheat-barley 5H recombinants. Five of them were inviable or sterile and the remaining 7 were fertile and subjected to the progeny test. Cytological analyses using fluorescence in situ hybridization and C-banding revealed that 6 of the 7 progeny lines are true homoeologous recombinants between the long arms of chromosomes 5D and 5H, but that the other one was not a recombinant having an aberrant barley telosome. The 6 cytologically confirmed recombinant lines included only 2 types (3 lines each), which were reciprocal products derived from exchanges at the same distal interval defined by two flanking markers. One type had a small 5HL segment translocated to the 5DL terminal, and the other type had a small terminal 5DL segment translocated to the 5HL terminal. In the latter type, the physical length of translocated barley segments slightly differed among lines. Homoeologous recombinants obtained in this study should be useful for further chromosome manipulation to introgress a small interstitial 5HL chromosome segment with the early heading gene(s) to wheat. Preferential occurrence of restricted types of recombinants is discussed in relation to homoeologous relationships between wheat and barley chromosomes.

    DOI: 10.1139/G04-096

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  • イネにおけるTos17でタグされた根の形態に関する突然変異系統の分子遺伝学的解析

    岩尾(虫鹿) 純子, 湯尾 崇央, 武田 真, 宮尾 安藝雄, 廣近 洋彦, 一井 眞比古

    育種学研究   7 ( 4 )   171 - 178   2005年

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    記述言語:日本語   出版者・発行元:日本育種学会  

    植物の根は,作物の栽培上大変重要な器官であるにもかかわらず,その遺伝学的研究は少ないのが現状である.本研究では,イネ内在性レトロトランスポゾンTos17の挿入変異系統群であるミュータントパネルを用いて,根の形態に関わる遺伝子の単離を目的として実験を行った.最初に,イネ品種日本晴由来のミュータントパネルのR1世代5,568系統を水耕栽培し,幼苗期に根突然変異体を分離する系統をスクリーニングした.続いて,後代検定で根突然変異系統と確認された56系統について,Tos17をプローブとするゲノミックサザン分析による表現型との連鎖解析を行った.その結果,Tos17でタグされた根突然変異系統が1系統(NC6949)獲得された.詳細な形態観察により,この突然変異体は少冠根,少側根,矮性,細葉及び不稔の表現型を示すことが明らかとなった.この突然変異系統では,第1染色体短腕上に座乗するputative alliinase遺伝子の第3エキソンにTos17が挿入されていることが明らかとなった.我々はこの遺伝子をOsAll1Oryza sativa alliinase 1)と名付けた.相補性検定により,OsAll1のゲノム配列全長を導入した形質転換イネでは,osall1突然変異体で観察されたすべての形態異常が回復したことから,これらの形態異常はOsAll1遺伝子の破壊に起因していることが示唆される.一方,イネゲノムにはOsAll1遺伝子を含め4個のalliinase様遺伝子が存在する.カルス,葉及び根におけるこれらの遺伝子の発現様式を解析した結果,これらは独自の発現様式を示すことが明らかとなった.これらの結果から,OsAll1は進化の過程で他のalliinase様遺伝子と機能的に分化したことが推察された.<br>

    DOI: 10.1270/jsbbr.07.171

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  • 水稲品種オオチカラ由来の短根性準同質遺伝子系統IL-srt1の根系形態と地上部地下部関係

    趙 仁貴, 劉 建, 塩津 文隆, 豊田 正範, 楠谷 彰人, 武田 真, 一井 眞比古

    根の研究   14 ( 4 )   157 - 164   2005年

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    記述言語:日本語   出版者・発行元:Japanese Society for Root Research  

    水稲品種オオチカラ由来の短根性準同質遺伝子系統IL-srt1の生育および根系形態を圃場試験とポット試験で調査し, オオチカラとの比較を通じて短根による地上部地下部関係への影響を検討した. IL-srt1の株当たり地上部乾物重, 分げつ数, 総根長および総根重は, 試験方法にかかわらずほぼ全生育期間でオオチカラを下回っていたが, 株当たり冠根数に差はなかった. 根重/根長比は根の平均直径が太いためにIL-srt1の方が高かったが比重に差はなかった. モノリス法による根系調査の結果, 生育時期や土壌位置にかかわらずIL-srt1の根長密度は低く, 根域は狭かった. 株当たり地上部乾物重の差は茎数の違いに基づいており, 出穂期までの茎当たり地上部乾物重に差はなかった. IL-srt1の茎当たり根長は短いが茎あたり冠根数が多く, またエイジの若い冠根の割合が高いことで茎当たりではオオチカラと同程度の養水分供給能力を達成したと推察された. また, 生育初期から根域の広さが供給可能な養水分量を介して分げつの生育や有効化に深く関与すると考えられた.

    DOI: 10.3117/rootres.14.157

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  • Involvement of ARM2 in the uptake of indole-3-butyric acid in rice (Oryza sativa L.) roots

    T Chhun, S Taketa, M Ichii, S Tsurumi

    PLANT AND CELL PHYSIOLOGY   46   S209 - S209   2005年

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    記述言語:英語   出版者・発行元:OXFORD UNIV PRESS  

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  • The short-root mutation srt5 defines a sugar-mediated root growth in rice (Oryza sativa L.) 査読

    SG Yao, J Mushika, S Taketa, M Ichii

    PLANT SCIENCE   167 ( 1 )   49 - 54   2004年7月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:ELSEVIER SCI IRELAND LTD  

    We previously reported a mutant, srt5, in which the short-root phenotype at the seedling stage could be partially rescued by exogenous abscisic acid (ABA) [Plant Sci. 163 (2002) 217]. In this paper, we describe that exogenously applied sucrose (Suc), glucose (Glu) or fructose (Fru), but not mannitol (Mtl) or glucose analogs, can also rescue root growth of the mutant to extents greater than ABA. Combined treatment reveals that root growth of the mutant under 1 muM ABA treatment can be further promoted by the addition of sugars. In contrast, application of ABA shows no promotive effects on 100 mM sugar-treated roots of srt5 seedlings. We also observed that endogenous sucrose contents in seeds and seedlings of srt5 are significantly lower, and starch breakdown in endosperm of srt5 is normal compared to wild-type. Furthermore, when treated with ABA, sucrose content in roots increases greatly in srt5, but decreases significantly in the wild-type. Collectively, these results suggest that energy deficiency is the cause of the srt5 phenotype, and ABA regulates root elongation of the mutant in a sugar-mediated way. The possible mechanism for ABA to promote root growth by enhancing the level of sugar in roots of srt5 is discussed. (C) 2004 Elsevier Ireland Ltd. All rights reserved.

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  • Different behaviour of indole-3-acetic acid and indole-3-butyric acid in stimulating lateral root development in rice (Oryza sativa L.) 査読

    T Chhun, S Taketa, S Tsurumi, M Ichii

    PLANT GROWTH REGULATION   43 ( 2 )   135 - 143   2004年6月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:KLUWER ACADEMIC PUBL  

    The plant hormone auxin has been shown to be involved in lateral root development and application of auxins, indole-3-acetic acid (IAA) and indole-3-butyric acid (IBA), increases the number of lateral roots in several plants. We found that the effects of two auxins on lateral root development in the indica rice (Oryza sativa L. cv. IR8) were totally different from each other depending on the application method. When the roots were incubated with an auxin solution, IAA inhibited lateral root development, while IBA was stimulatory. In contrast, when auxin was applied to the shoot, IAA promoted lateral root formation, while IBA did not. The transport of [H-3]IAA from shoot to root occurred efficiently (% transported compared to supplied) but that of [H-3]IBA did not, which is consistent with the stimulatory effect of IAA on lateral root production when applied to the shoot. The auxin action of IBA has been suggested to be due to its conversion to IAA. However, in rice IAA competitively inhibited the stimulatory effect of IBA on lateral root formation when they were applied to the incubation solution, suggesting that the stimulatory effect of IBA on lateral root development is not through its conversion to IAA.

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  • Monophyletic origin of naked barley inferred from molecular analyses of a marker closely linked to the naked caryopsis gene (nud) 査読

    S Taketa, S Kikuchi, T Awayama, S Yamamoto, M Ichii, S Kawasaki

    THEORETICAL AND APPLIED GENETICS   108 ( 7 )   1236 - 1242   2004年5月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:SPRINGER-VERLAG  

    To elucidate the origin of naked barley, molecular variation of the marker sKT7 tightly linked to the nud locus was examined. A total of 259 (53 wild, 106 hulled domesticated, and 100 naked domesticated) barley accessions were studied. Restriction analysis of the sKT7 PCR-amplified product revealed the alleles I, II, III, and IV. All four alleles were found in wild barley, but allele IV was found only in a single accession from southwestern Iran. Hulled domesticated accessions showed alleles I, II, or III, but all naked domesticated accessions had allele IV. The distribution of allele IV in wild barley and its pervasive presence in naked domesticated lines support the conclusion that naked barley has a monophyletic origin, probably in southwestern Iran. The available results suggest two scenarios for the origin of naked barley: either directly from a wild barley with allele IV or from a hulled domesticated line with allele IV that later became extinct. Naked domesticated accessions from different regions of the world have extremely homogeneous DNA sequences at the sKT7 locus, supporting the monophyletic origin of naked barley. For allele IV, four haplotypes (IVb to IVe) were found in 30 naked accessions: IVb was predominant (66.7%) and widely distributed, while the other three haplotypes, differing by only one nucleotide at different positions relative to IVb, showed a localized distribution. The geographical distribution of the haplotypes of sKT7 allele IV suggests migration routes of naked domesticated barley in central and eastern Asia.

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  • Interaction between two auxin-resistant mutants and their effects on lateral root formation in rice (Oryza sativa L.) 査読

    T Chhun, S Taketa, S Tsurumi, M Ichii

    JOURNAL OF EXPERIMENTAL BOTANY   54 ( 393 )   2701 - 2708   2003年12月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:OXFORD UNIV PRESS  

    Since root elongation is very sensitive to auxin, screening for reduced inhibition in root elongation has been an important method for the detection of auxin-resistant mutants. Two recessive auxin-resistant lines of rice (Oryza sativa L. ssp. indica cv. IR8), arm1 and arm2, have been isolated by screening for resistance to 2,4-dichlorophenoxyacetic acid (2,4-D). arm1 displays a variety of morphological defects including reduced lateral root formation, increased seminal root elongation, reduced root diameter, and impaired xylem development in roots, while the arm2 phenotype is almost similar to wild-type IR8 except for a slightly reduced lateral root formation, impaired xylem development in roots and an enhanced plant height. Although the growth of arm2 roots exhibited a resistance to 2,4-D, it was sensitive to 1-naphthaleneacetic acid (NAA) as the wild type. At the same time, the arm2 roots showed a reduced [C-14]2,4-D uptake while uptake of [H-3]NAA was normal, suggesting that the resistance to 2,4-D of arm2 roots is due to a defect in 2,4-D uptake. To investigate the possible interaction between arm1 and arm2 genes, a double mutant has been constructed. The roots of arm1 arm2 double mutant were more resistant to 2,4-D and formed fewer lateral roots than those of either single mutant, suggesting that the two genes show synergistic effects with respect to both auxin response and lateral root formation. By contrast, all these mutants displayed the normal gravitropic response in roots, as did the wild-type plants. Taken together, Arm1 and Arm2 genes seem to function in different processes in the auxin-response pathways leading to lateral root formation.

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  • Efficient fine mapping of the naked caryopsis gene (nud) by HEGS (High Efficiency Genome Scanning)/AFLP in barley 査読

    S Kikuchi, S Taketa, M Ichii, S Kawasaki

    THEORETICAL AND APPLIED GENETICS   108 ( 1 )   73 - 78   2003年12月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:SPRINGER-VERLAG  

    The hulled or naked caryopsis character of barley (Hordeum vulgare L.) is an important trait for edibility and to follow its domestication process. A single recessive gene, nud, controls the naked caryopsis character, and is located on the long arm of chromosome 7H. To develop a fine map around the nud locus efficiently, the HEGS (High Efficiency Genome Scanning) electrophoresis system was combined with amplified fragment length polymorphism (AFLP). From bulked segregant analysis of 1,894 primer combinations, 12 AFLP fragments were selected as linked markers. For mapping, an F-2 population of 151 individuals derived from a cross between Kobinkatagi (naked type) and Triumph (hulled type) was used. Seven AFLP markers were localized near the nud region. A fine map was developed with one-order higher resolution than before, along with the seven anchor markers. Among the seven linked AFLP markers (KT1-7), KT1, KT2 and KT6 were co-dominant, and the former two were detected for their single-nucleotide polymorphisms (SNPs) in the same length of fragments after electrophoresis with the non-denaturing gels of HEGS. The nud locus has co-segregated with KT3 and KT7, and was flanked by KT2 and KT4, at the 0.3-cM proximal and the 1.2-cM distal side, respectively. Four of these AFLP markers were converted into sequence-characterized amplified region (SCAR) markers, one of which was a dominant marker co-segregating with the nud gene.

    DOI: 10.1007/s00122-003-1413-y

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  • Lateral root formation in rice (Oryza Sativa L.): differential effects of indole-3-acetic acid and indole-3-butyric acid 査読

    SC Wang, S Taketa, M Ichii, LL Xu, K Xia, Zhou, X

    PLANT GROWTH REGULATION   41 ( 1 )   41 - 47   2003年9月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:KLUWER ACADEMIC PUBL  

    Comparative effects of indole-3-acetic acid (IAA) and indole-3-butyric acid (IBA) on lateral root (LR) formation were studied using 2-day-old seedlings of IR8 rice (Oryza sativa L.). Results showed that IBA at all concentrations (0.8 - 500 nmol/L) increased the number of LRs in the seminal root. However exogenous IAA, failed to increase the number of LRs. On the other hand, both IBA and IAA caused inhibition of seminal root elongation and promotion of LR elongation, but IAA can only reach to the same degree of that of IBA at a more than 20-fold concentration. Exogenous IBA had no effect on endogenous IAA content. We conclude from the results that IBA could act directly as a distinct auxin, promoting LR formation in rice, and that the signal transduction pathway for IBA is at least partially different from that for IAA.

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  • Morphological and physiological characteristics of a root-hairless mutant in rice (Oryza sativa L.) 査読

    N Suzuki, S Taketa, M Ichii

    PLANT AND SOIL   255 ( 1 )   9 - 17   2003年8月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:KLUWER ACADEMIC PUBL  

    This paper reports morphological and physiological characteristics of a first root-hairless mutant (RH2) of rice ( Oryza sativa L.), which can be useful in advancing knowledge on the role of root hairs in water and nutrient uptake, and genetics of root hairs. The mutant was selected among NaN3 mutagenized progeny of the rice cultivar Oochikara. Microscopic observations showed absence of root hairs in RH2. At the seedling stage, RH2 showed shorter seedling height and shorter roots compared to the wild type variety Oochikara. Because of the differences in seedling growth, all comparisons between Oochikara and RH2 in uptake-related characters were made on the basis of values adjusted by the dry weight of either the shoot or the root. When grown at low water potential in soil, Oochikara and RH2 were similar in shoot water content and transpiration per unit shoot dry weight, and similarly, at low water potential in solution culture, there was no significant difference between Oochikara and RH2 in transpiration per unit shoot dry weight. These results suggest that at the seedling stage, root hairs do not significantly contribute to uptake of water. In solution culture, Oochikara and RH2 did not significantly differ in phosphate uptake per unit root dry weight. This result supports the previous work that root hairs do not contribute to phosphate uptake in solution culture. Regarding to response to plant hormones, RH2 showed a higher level of resistance to two synthetic auxins, 2,4-dichlorophenoxyacetic acid ( 2,4-D) and 1-naphthaleneacetic acid (NAA) than Oochikara. NAA treatment induced very short root hairs in RH2, suggesting that the absence of root hairs in RH2 may be due to a shortage of endogenous auxin. Genetic analysis showed that the root hairless character in RH2 is inherited as a single recessive gene.

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  • Isolation and characterization of an abscisic acid-in sensitive mutation that affects specifically primary root elongation in rice (Oryza sativa L.) 査読

    SG Yao, S Taketa, M Ichii

    PLANT SCIENCE   164 ( 6 )   971 - 978   2003年6月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:ELSEVIER SCI IRELAND LTD  

    The isolation and detailed characterization of a monogenic recessive root growth mutant, srt6, which was derived from an M, population of rice (Oryza sativa L.) cv. Oochikara treated with NaN3, is described. Besides greatly reduced primary root length and diameter. the mutant at the seedling stage also shows inhibited lateral root elongation and altered root hair formation. Hydroponic cultivation reveals that root length of the mutant recovers to the level of the wild type at the booting stage, but both lateral root elongation and root hair formation in the mutant remain inhibited at all growth stages. These observations suggest that the expression of the srt6 gene is phase-specific, and that the effects of SRT6 on root growth are restricted specifically to the development of primary roots. Physiological characterization reveals that the mutant has pleiotropic defects in abscisic acid (ABA) responses. which are similar to those reported for Arabidopsis ABA-insensitive mutants abi1 and abi2, i.e. reduced sensitivity of root growth and seed germination, and excessive water loss. Combined with its normal response of root growth to fluridone, the ABA biosynthesis inhibitor, suggesting that the action of the srt6 gene might be related to ABA perception or signal transduction but not ABA biosynthesis in the controlling of early primary root elongation in rice. (C) 2003 Elsevier Science Ireland Ltd. All rights reserved.

    DOI: 10.1016/S0168-9452(03)00081-5

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  • The effects of auxin on lateral root initiation and root gravitropism in a lateral rootless mutant Lrt1 of rice (Oryza sativa L.) 査読

    T Chhun, S Taketa, S Tsurumi, M Ichii

    PLANT GROWTH REGULATION   39 ( 2 )   161 - 170   2003年2月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:KLUWER ACADEMIC PUBL  

    Auxins control growth and development in plants, including lateral root initiation and root gravity response. However, how endogenous auxin regulates these processes is poorly understood. In this study, the effects of auxins on lateral root initiation and root gravity response in rice were investigated using a lateral rootless mutant Lrt1, which fails to form lateral roots and shows a reduced root gravity response. Exogenous application of IBA to the Lrt1 mutant restored both lateral root initiation and root gravitropism. However, application of IAA, a major form of natural auxin, restored only root gravitropic response but not lateral root initiation. These results suggest that IBA is more effective than IAA in lateral root formation and that IBA also plays an important role in root gravitropic response in rice. The application of NAA restored lateral root initiation, but did not completely restore root gravitropism. Root elongation assays of Lrt1 displayed resistance to 2,4-D, NAA, IBA, and IAA. This result suggests that the reduced sensitivity to exogenous auxins may be due to the altered auxin activity in the root, thereby affecting root morphology in Lrt1.

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  • Characterization of CMS and maintainer lines in indica rice (Oryza sativa L.) based on RAPD marker analysis 査読

    M Ichii, DL Hong, Y Ohara, CM Zhao, S Taketa

    EUPHYTICA   129 ( 2 )   249 - 252   2003年

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:KLUWER ACADEMIC PUBL  

    Total DNA from WA type CMS lines: Zhenshan 97 A, Longtepu A and their maintainers Zhenshan 97 B, Longtepu B was extracted by CTAB method. One hundred primers were used for screening RAPD markers to distinguish CMS line (A) and maintainer (B) plants at seedling stage. Results showed that under the conditions of 37 C annealing temperature and 1.5 mM MgCl2 concentration, in Zhenshan 97 A, Longtepu A there was a 1600 bp DNA fragment in product amplified by primer OPA12, while in Zhenshan 97 B, and Longtepu B no 1600 bp fragment was found. The 1600 bp fragment was also found in DA type CMS line Xieqingzao A, but was absent in Xieqingzao B. Also in the restorer line, Minghui 63 the 1600 bp fragment was absent. In F-1 and F-2 generation of Zhenshan 97A/Minghui 63, all plants investigated had the 1600 bp fragment. When mitochondrial DNA (mtDNA) was isolated from the three CMS (A) and their B lines and amplified by OPA12, results showed that the 1600 fragment was found in all the three A lines and was absent in the three B lines. In DA type Xieqingzao A, two other fragments (700 bp, 1000 bp) were also found except the 1600 bp. These results indicate that the 1600 bp fragment derived from CMS mitochondrial DNA can be used as a RAPD marker to distinguish A and B plants at seedling stage, and the fragments (700 bp, 1000 bp) can be used to distinguish WA and DA cytoplasms.

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  • Isolation and characterization of a short lateral root mutant in rice (Oryza sativa L.) 査読

    Debi, B.R., Mushika, J., Taketa, S., Miyao, A., Hirochika, H., Ichii, M.

    Plant Science   165 ( 4 )   2003年

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    掲載種別:研究論文(学術雑誌)  

    DOI: 10.1016/S0168-9452(03)00293-0

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  • Lateral root formation in rice (Oryza sativa): promotion effect of jasmonic acid 査読

    SC Wang, M Ichii, S Taketa, LL Xu, K Xia, Zhou, X

    JOURNAL OF PLANT PHYSIOLOGY   159 ( 8 )   827 - 832   2002年8月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:URBAN & FISCHER VERLAG  

    The effect of JA on lateral root (LR) formation was tested using 2-day-old seedlings of IR8 rice (Oryza sativa L.). Results showed that JA in all concentrations (0.016-50 mumol/L) increased the number of LRs in the region of seminal root formed during and after the treatment (distal region), but had no effect (less than 2 mumol/L) or decreased (over 2 mumol/L) the number of LRs in the region already formed before treatment (basal region). On the other hand, the development of root hair in the distal region was inhibited, and even fully blocked by JA over 1 mumol/L. Both JA's effects on promoting LR formation and inhibiting root hair formation in the distal region could last at least 7 days subsequent to the removal of JA treatment. All these results indicated that JA might be one of the potent hormonal factors, other than auxin, involved in the regulation of LR formation.

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  • Molecular and physical mapping of a barley gene on chromosome arm 1HL that causes sterility in hybrids with wheat 査読

    S Taketa, M Choda, R Ohashi, M Ichii, K Takeda

    GENOME   45 ( 4 )   617 - 625   2002年8月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:NATL RESEARCH COUNCIL CANADA  

    Addition of the long arm of barley chromosome 1H (1HL) to wheat causes severe meiotic abnormalities and complete sterility of the plants. To map the barley gene responsible for the 1H-induced sterility of wheat, a series of addition lines of translocated 1H chromosomes were developed from the crosses between the wheat 'Shinchunaga' and five reciprocal translocation lines derived from the barley line St.13559. Examination of the seed fertility of the addition lines revealed that the sterility gene is located in the interstitial 25% region of the 1HL arm. The genetic location of the sterility gene was also estimated by physically mapping sequence-tagged site (STS) markers and simple-sequence repeat (SSR) markers with known map locations. The sterility gene is designated Shw ((s) under bar terility in (h) under bar ybrids with (w) under bar heat). Comparison of the present physical map of 1HL with two previously published genetic maps revealed a paucity of markers in the proximal 30% region and non-random distribution of SSR markers. Two inconsistencies in marker order were found between the present physical map and the consensus genetic map of group 1 chromosomes of Triticeae. On the basis of the effects on meiosis and chromosomal location, the relationship of the present sterility gene with other fertility-related genes of Triticeae is discussed.

    DOI: 10.1139/G02-024

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  • A novel short-root gene that affects specifically early root development in rice (Oryza sativa L.) 査読

    SG Yao, S Taketa, M Ichii

    PLANT SCIENCE   163 ( 2 )   207 - 215   2002年8月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:ELSEVIER SCI IRELAND LTD  

    We have isolated a novel short-root mutant, srt5, from an M-2 population of rice (Oryza sativa L. cv. Oochikara) treated with NaN3, and mapped its causal gene to chromosome 2. The mutant showed extreme inhibition of seminal root, crown root and lateral root elongation, and altered root hair formation at the seedling stage. Histological observation of seminal root tips indicated that the short-root phenotype was due to the reduced cell size and cell number. At later stages of plant development, roots of the mutant elongated acceleratingly and recovered normal morphology 45 days after transplantation, and adult plants of the mutant resembled the wild type except for reduced pollen and seed fertilities. Seminal root growth of the mutant was partially rescued by exogenously applied ABA, suggesting that ABA biosynthesis might be affected in srt5 plants. Moreover, the mutant also showed high resistance to 2,4-D, GA; and KIN based on seminal root growth assays, but the resistance to these hormones disappeared when ABA was concomitantly applied. Thus, the wild type allele of srt5 seems to be of great importance for early root development by altering plant hormone homeostasis, in which ABA plays a critical role. (C) 2002 Elsevier Science Ireland Ltd. All rights reserved.

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  • Effect of jasmonic acid on lateral root formation in rice seedling 査読

    SC Wang, M Ichii, S Taketa, LL Xu, K Xia, Zhou, X

    ACTA BOTANICA SINICA   44 ( 4 )   502 - 504   2002年4月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:SCIENCE CHINA PRESS  

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  • A DNA marker closely linked to the vrs1 locus (row-type gene) indicates multiple origins of six-rowed cultivated barley (Hordeum vulgare L.) 査読

    K Tanno, S Taketa, K Takeda, T Komatsuda

    THEORETICAL AND APPLIED GENETICS   104 ( 1 )   54 - 60   2002年1月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:SPRINGER-VERLAG  

    The origin of six-rowed cultivated barley was studied using a DNA marker cMWG699 closely linked to the vrs1 locus. Restriction patterns of the PCR-amplified product of the cMWG699 locus were examined in 280 cultivated (Hordeum vulgare ssp. vulgare) and 183 wild (H. vulgare ssp. spontaneum) barleys. Nucleotide sequences of the PCR products were also examined in selected accessions. Six-rowed cultivated barleys were divided into two distinct groups, types I and II. Type I six-rowed cultivated barley was distributed widely while type II six-rowed cultivated barley was found only in the Mediterranean region. The type I sequence was also found in a wild barley accession from Turkmenistan whereas the type II sequence was also found in a two-rowed cultivated barley from North Africa and a wild barley from Morocco. These results suggested that the six-rowed type I and II barleys were derived from two-rowed type I and II barleys, respectively, by independent mutations at the vrs1 locus.

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  • Differential effects of cultivated and wild barley 5H chromosomes on heading characters in wheat-barley chromosome addition lines 査読

    T Kawahara, S Taketa, K Murai

    HEREDITAS   136 ( 3 )   195 - 200   2002年

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:BLACKWELL MUNKSGAARD  

    Wheat (Triticum aestivum L.)-barley (Hordeum vulgare L.) chromosome addition lines are possible vehicles for transferring barley genes into wheat. The barley 5H chromosome has genetic effects on the heading characters in wheat-barley addition lines: accelerating narrow-sense earliness, decreasing vernalization requirement and/or increasing photoperiodic, sensitivity. To elucidate the effects of different 5H chromosomes under an identical wheat genetic background, two wheat-barley addition lines, i.e. cultivated barley 'New Golden' 5H chromosome added to 'Shinchunaga' wheat (Shi-NG5H) and wild barely H. vulgare ssp. spontaneum 5H chromosome added to 'Shinchunaga' wheat (Shi-Spn5H), were examined for their heading characters. The addition line Shi-NG5H showed a significantly lower vernalization requirement in comparison with 'Shinchunaga' wheat, whereas Shi-Spn5H did not. Furthermore, both NG5H and Spn5H chromosomes shortened narrow-sense earliness and increased photoperiodic sensitivity in wheat, but the effects of Spn5H were weaker than those of NG5H. The fact that NG5H and Spn5H showed differential effects on heading characters in wheat demonstrated that the heading characters were altered by the function of the barley genes located on 5H chromosomes, not merely by the aneuploid effect alone.

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  • Chromosome arm location of the gene controlling leaf pubescence of a Chinese local wheat cultivar 'Hong-mang-mai' 査読

    S Taketa, CL Chang, M Ishii, K Takeda

    EUPHYTICA   125 ( 2 )   141 - 147   2002年

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:KLUWER ACADEMIC PUBL  

    The inheritance of the leaf pubescence character of a Chinese local wheat cultivar `Hon-mang-mai' was investigated by monosomic and telosomic analyses. Leaf pubescence was evaluated by observation of the adaxial side of the penultimate leaf of adult plants. F-1 hybrids of `Hong-mang-mai' with a non-pubescent cultivar `Chinese Spring' had leaf pubescence, but its density was about a half of that of `Hong-mang-mai'. In the F-2 generation, the segregation ratio of pubescent to non-pubescent plants fitted a ratio of 3: 1, suggesting that leaf pubescence was controlled by one dominant gene. Monosomic analysis revealed that the gene for pubescence is located on chromosome 7B. Telosomic analysis showed that the gene is located on the short arm of chromosome 7B with a distance of 14.3% from the centromere. This gene is not allelic with the previously reported hairy leaf gene Hl on chromosome 4B, and therefore, is designated Hl2, hairy leaf 2.

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  • Chromosomes responsible for sensitivity of embryo to abscisic acid and dormancy un wheat.

    Noda, K, T. Matsuura, M. Maekawa, S. Taketa

    Euphytica   123   203 - 209   2002年

  • Production and characterization of a complete set of wheat-wild barley (Hordeum vulgare ssp spontaneum) chromosome addition lines 査読

    S Taketa, K Takeda

    BREEDING SCIENCE   51 ( 3 )   199 - 206   2001年9月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:JAPANESE SOC BREEDING  

    A wild barley, Hordeum vulgare L. ssp. spontaneum (C. Koch.) Thell. (syn. H. spontaneum C. Koch.) is considered to be the progenitor of cultivated barley (H. vulgare L. ssp. vulgare). A complete set of Triticum aestivum L. cv. 'Shinchunaga'-H. spontaneum OUH602 whole chromosome addition lines, and 5 telosomic addition lines were developed. Chromosome constitutions of the addition lines were confirmed by C-banding and genomic in situ hybridization. Addition lines for the entire IR chromosome and its long arm are only available as monosomic and monotelosomic additions, respectively, because of sterility. All other lines were recovered as disomic or ditelosomic additions. Self-sterile monosomic III and monotelosomic 1HL addition lines can be reproduced by backcrossing the plants having simultaneous addition of the long arm of barley chromosome 6H, because the plants with such chromosome constitutions recover partial female fertility. In general, the phenotypic alternations observed in each of the wheat-H. spontaneum OUH602 addition lines were similar to those previously noted in the corresponding lines of the 'Chinese Spring' wheat-'Betzes' barley addition series and the primary trisomic series of the H. spontaneum accession OUH602. Monotelosomic 1HL addition and ditelosomic IHS addition are especially valuable for unequivocal chromosome arm localization of barley genes and markers clustered around the centromeric region of 1H. The utility of the wheat-H. spontaneum addition lines is discussed.

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  • Physical locations of 5S and 18S-25S rDNA in Asian and American diploid Hordeum species with the I genome 査読

    S Taketa, H Ando, K Takeda, R Von Bothmer

    HEREDITY   86   522 - 530   2001年5月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:BLACKWELL SCIENCE LTD  

    The physical locations of 5S and 18S-25S rDNA sequences in 15 diploid Hordeum species with the I genome were examined by double-target in situ hybridization with pTa71 (18S-25S rDNA) and pTa794 (5S rDNA) clones as probes. All the three Asian species had a species-specific rDNA pattern. In 12 American species studied, eight different rDNA types were found. The type reported previously in H. chilense (the 'chilense' type) was observed in eight American species. The chilense type had double 5S rDNA sites-two sites on one chromosome arm separated by a short distance-and two pairs of major 18S-25S rDNA sites on two pairs of satellite chromosomes. The other seven types found in American species were similar to the chilense type and could be derived from the chilense type through deletion. reduction or addition of a rDNA site. Intraspecific polymorphisms were observed in three American species. The overall similarity in rDNA patterns among American species indicates the close relationships between North and South American species and their derivation from a single ancestral source. The differences in the distribution patterns of 5S and 18S-25S rDNA between Asian and American species suggest differentiation between the I genomes of Asian and American species. The 5S and 18S-25S rDNA sites are useful chromosome markers for delimiting Asian species, but have limited value as a taxonomic character in American species. On the basis of rDNA patterns. karyotype evolution and phylogeny of the I-genome diploid species are discussed.

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  • The influence of a spring habit gene, Vrn-D1, on heading time in wheat 査読

    H Kato, S Taketa, T Ban, N Iriki, K Murai

    PLANT BREEDING   120 ( 2 )   115 - 120   2001年4月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:BLACKWELL WISSENSCHAFTS-VERLAG GMBH  

    The adaptability of wheat cultivars to environmental conditions is known to be associated with a vernalization requirement, that is, spring/winter habit. To clarify the genetic effect of the spring habit gene, Vrn-D1, on heading time in the field, recombinant inbred lines (RILs) with or without the Vrn-D1 gene were produced from F-2 plants of the cross between 'Nanbukomugi' and 'Nishikazekomugi', non-carrier and carrier cultivars of this gene, respectively. Using growth chambers with a controlled temperature and photoperiod, three components of heading time, i.e, vernalization requirement, photoperiodic sensitivity and narrow-sense earliness (earliness per se), were evaluated in each RIL. RILs with the Vrn-D1 gene (E lines) showed greatly reduced vernalization requirements and slightly shorter narrow-sense earliness than RILs without Vrn-D1 (L lines), although no difference in photoperiodic sensitivity was observed between the two groups. RILs were planted at four different sites in Japan and examined for their heading time in the field. E lines headed significantly earlier than L lines at all locations, indicating that the earliness of E lines is stable in various environmental conditions. These results indicated that spring habit caused by Vrn-D1 gene, as well as narrow-sense earliness, was responsible for heading time in the field.

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  • Molecular mapping of the cnx2 locus involved in molybdenum cofactor biosynthesis in rice (Oryza sativa L.) 査読

    EA Barlaan, H Sato, J Mushika, S Taketa, M Ichii

    THEORETICAL AND APPLIED GENETICS   102 ( 4 )   540 - 544   2001年3月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:SPRINGER-VERLAG  

    Molybdenum cofactor (Moco) is essential for nitrate reductase (NR), xanthine dehydrogenase (XDH), and aldehyde oxidase to perform their catalytic functions in plants. Moco biosynthesis is a complex process involving many genes. Little is known about the genetics and molecular aspects of Moco biosynthesis in plants and other eukaryotes. In rice, we previously isolated a Moco mutant C25 with a mutation in the CNX2 gene from a mutagenized indica cultivar IR30 and characterized its biochemical properties. This mutant was crossed with a japonica cultivar, Norin 8, to investigate the linkage of cnx2 to restriction fragment length polymorphism (RFLP) and cleaved amplified polymorphic sequence (CAPS) markers. Chlorate resistance was used to trace the cnx2 mutation because of its cosegregation with the loss of NR and XDH activities observed earlier. RFLP and CAPS analyses show the location of the cnx2 locus on the long arm of chromosome 4. It is mapped between RFLP markers C513 and C377 with a distance of 9.5 and 13.1 cM, respectively. It is also linked with CAPS marker RA0738 at a distance of 30.3 cM.

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  • Molecular mapping of a fertility restoration locus (Rfm1) for cytoplasmic male sterility in barley (Hordeum vulgare L.). 査読

    Matsui, K, Y. Mano, S. Taketa, N. Kawada, T. Komatsuda

    Theoretical and Applied Genetics   102   477 - 482   2001年

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  • Fixation of translocation 2A center dot 4B infers the monophyletic origin of Ethiopian tetraploid wheat 査読

    T Kawahara, S Taketa

    THEORETICAL AND APPLIED GENETICS   101 ( 5-6 )   705 - 710   2000年10月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:SPRINGER-VERLAG  

    Analysis of structural chromosomal polymorphism revealed the presence of a previously reported 2A.4B translocation common to all 15 strains of Ethiopian tetraploid wheat examined. Using the C-banding technique, we found two new translocations, T1B.6B and T5B.6B, and a pericentric inversion of chromosome 5A. The C-banding pattern indicated that in all three translocations the breakpoint was located in the centromeric region. Sequential N-banding and genomic in situ hybridization (GISH) confirmed the location of the breakpoint of translocation 2A.4B, and revealed that the breakpoint of another known translocation, 2A-2B, was in the proximal region of 2BL. The fixation of the 2A.4B translocation indicates the monophyletic origin of Ethiopian tetraploid wheat and the presence of a very severe bottleneck effect during its dispersal.

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  • Barley allele-specific amplicons useful for identifying wheat-barley recombinant chromosomes 査読

    K Murai, S Taketa, AKMR Islam, KW Shepherd

    GENES & GENETIC SYSTEMS   75 ( 3 )   131 - 139   2000年6月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:GENETICS SOC JAPAN  

    Barley (Hordeum vulgare L.) is potentially a new source of genes for wheat (Triticum aestivum L.) improvement. Wheat-barley chromosome recombinant lines provide a means for introgressing barley genes to wheat genome by chromosome engineering, and since these are expected to occur only rarely in special cytogenetic stocks, an efficient selection skill is necessary to identify them. To convert RFLP markers to barley allele-specific PCR markers useful for effective production of wheat-barley recombinant lines, 91 primer sets derived from RFLP clones which were previously mapped to the barley chromosomes were examined for PCR amplification using 'Chinese Spring' wheat, 'Betzes' barley and the wheat-barley chromosome addition lines. The polymorphisms were detected by an agarose gel electrophoresis of the PCR products without digestion with restriction enzymes. Out of 81 primer sets producing polymorphisms between the wheat and barley genomes, 26 amplified barley chromosome-specific DNAs which were confirmed to be located on the same chromosome as the RFLP markers by using the wheat-barley chromosome addition lines. These amplified DNAs represent barley allele-specific amplicons, which distinguish barley alleles from their wheat homoeologous counterparts. The present investigation revealed a higher probability for obtaining allele-specific amplicons from genomic DNA-derived RFLP markers than from cDNA-derived ones. The barley allele-specific amplicons developed in this study, namely, four for chromosome 2H, two for 3H, seven for 4H, eight for 5H, one for 6H and four for 7H, are suitable for identifying 'Chinese Spring' wheat- 'Betzes' barley recombinant chromosomes. However, one out of eight barley allele-specific amplicons on chromosome 5H did not detect a unique barley band in a 'New Golden' barley chromosome 5H addition line of 'Shinchunaga' wheat, indicating there may be a need to reconstruct allele-specific amplicons with different barley cultivars.

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  • The distribution, organization and evolution of two abundant and widespread repetitive DNA sequences in the genus Hordeum 査読

    S Taketa, H Ando, K Takeda, GE Harrison, JS Heslop-Harrison

    THEORETICAL AND APPLIED GENETICS   100 ( 2 )   169 - 176   2000年1月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:SPRINGER VERLAG  

    The genomic organization and chromosomal distributions of two abundant tandemly repeated DNA sequences, dpTa1 and pSc119.2, were examined in six wild Hordeum taxa, representing the four basic genomes of the genus, by Southern and fluorescence in situ hybridization. The dpTa1 probe hybridized to between 30 and 60 sites on the chromosomes of all five diploid species studied, but hybridization patterns differed among the species. Hybridization of the pSc119.2 sequence to the chromosomes and Southern blots of digested DNA detected signals in Hordeum bulbosum, Hordeum chilense, Hordeum marinum and Hordeum murinum 4x, but not in Hordeum murinum 2x and Hordeum vulgare ssp. spontaneum. A maximum of one pSc119.2 signal was observed in the terminal or subterminal region of each chromosome arm in the species carrying this sequence. The species carrying the same I-genome differed in the presence (Hordeum bulbosum) or absence (Hordeum spontaneum) of pSc119.2. The presence of pSc119.2 in the tetraploid cytotype of Hordeum murinum, but its absence in the diploid cytotype, suggests that the tetraploid is not likely to be a simple autotetraploid of the diploid. Data about the inter- and intra-specific variation of the two independent repetitive DNA sequences give information about both the interrelationships of the species and the evolution of the repetitive sequences.

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  • Aluminum tolerance genes on the short arm of chromosome 3R are linked to organic acid release in triticale

    Jian Feng Ma, S. Taketa, Zhen Ming Yang

    Plant Physiology   122 ( 3 )   687 - 694   2000年

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    掲載種別:研究論文(学術雑誌)  

    Triticale, a hybrid between wheat and rye, shows a high degree of Al tolerance that is inherited from rye, but the mechanisms of high Al tolerance in both rye and triticale are unknown. We found that the short arm of chromosome 3R carries genes necessary for Al tolerance in triticale (x Triticosecale Wittmark cv Currency). Detailed comparative studies with a 3DS.3RL translocation line (ST22) and a non-substitution line (ST2) were conducted. Root elongation was similarly inhibited by Al in ST2 and ST22 during the first 12 h of Al treatment, but more strongly in ST22 than in ST2 at 18 h and thereafter. The root inhibition induced by other metals (Cu, Cd, and La) was similar between ST2 and ST22, suggesting that the action of the genes for Al tolerance on the short arm of triticale chromosome 3R is highly specific to Al. A 2-fold larger amount of malate and citrate was released from the roots of ST2 than from ST22 at 12 and 18 h after Al treatment, respectively. The marked lag phase in the inhibition of root elongation and the release of organic acids implies that the expression of genes on the short arm of triticale chromosome 3R is induced by Al, and that these genes are necessary for the release of organic acids.

    DOI: 10.1104/pp.122.3.687

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  • IDENTIFICATION OF CHROMOSOMAL ARM LOCATION OF AL-TOLERANT GENES IN RYE

    MA Jian Feng, TAKETA Shin, YANG Zhen Ming, TAKEDA Kazuyoshi, MATSUMOTO Hideaki

    Plant and cell physiology   40   s101 - s101   1999年3月

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  • IDENTIFICATION OF CHROMOSOMAL ARM LOCATION OF GENES CONTROLLING HYDROXYLATION OF PHYTOSIDEROPHORES IN BARLEY

    MA Jian Feng, TAKETA Shin, CHANG Yi-Chieh, NOMOTO Kyosuke, IWASHITA Takashi, TAKEDA Kazuyoshi, MATSUMOTO Hideaki

    Plant and cell physiology   40   s96 - s96   1999年3月

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  • Detection of Hordeum marinum genome in three polyploid Hordeum species and cytotypes by genomic in situ hybridization 査読

    S Taketa, H Ando, K Takeda, R von Bothmer

    HEREDITAS   130 ( 2 )   185 - 188   1999年

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:HEREDITAS-DISTRIBUTION  

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  • Genes controlling hydroxylations of phytosiderophores are located in different chromosomes in barley(Hordeum vulgare L. ).

    Ma, J. F, Taketa, S, Chang, Y. C, Iwashita, T, Matsumoto, H, Takeda, K, Nomoto, K

    Planta   207 ( 4 )   590 - 596   1999年

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    掲載種別:研究論文(学術雑誌)  

    DOI: 10.1007/s004250050522

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  • Biosynthesis of phytosiderophores in several Triticeae species with different genomes.

    Ma, J. F, Taketa, S, Chang, Y. C, Takeda, K, Matsumoto, H

    J. Expt. Bot.   50 ( 334 )   723 - 726   1999年

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    掲載種別:研究論文(学術雑誌)  

    DOI: 10.1093/jexbot/50.334.723

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  • Genetic variation in barley of crossability with wheat and its quantitative trait loci analysis

    S Taketa, H Takahashi, K Takeda

    EUPHYTICA   103 ( 2 )   187 - 193   1998年

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:KLUWER ACADEMIC PUBL  

    To study genetic variation in crossability, 80 barley accessions of diverse geographic origin consisting of 50 wild barleys (H. vulgare ssp. spontaneum or ssp. agriocrithon) and 30 cultivated barleys (H. vulgare ssp. vulgare) were crossed as the male parent with a highly crossable wheat variety, Shinchunaga. Crossabilities, expressed as the percentage of pollinated florets giving embryo-containing caryopses, ranged from 0% to 68.6%. Barley accessions from East Asia had generally a low crossability, while barley accessions from other regions exhibited a wider range of crossability including highly crossable genotypes. No significant difference in mean crossability was found between wild and cultivated barleys. To estimate the number and location of barley genes controlling the crossability, doubled haploid lines derived from the cross between the barley varieties Steptoe and Morex were crossed as the male parent with wheat. Quantitative trait loci (QTL) analysis using molecular markers identified four QTL. These were mapped to the centromeric regions of chromosomes 2H, 3H and 5H and the short arm of chromosome 7H. The QTL on chromosomes 3H and 5H had larger effects than those on chromosomes 2H and 7H. The four QTL collectively explained 35.4% of the total variance under a multiple QTL model. Relationships of the QTL identified in the present study with previously reported crossability genes of barley and wheat are discussed.

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  • Expression of dominant marker genes of barley in wheat-barley hybrids 査読

    S Taketa, K Takeda

    GENES & GENETIC SYSTEMS   72 ( 2 )   101 - 106   1997年4月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:GENETICS SOC JAPAN  

    Seven dominant marker genes controlling morphological characters of barley were introduced into a wheat genetic background through hybridization between a Japanese bread wheat cultivar, Shinchunaga, and barley marker stocks. F-1 hybrids and their derivatives were analyzed by C-banding to confirm the presence and dosage of particular barley chromosomes carrying the marker genes. The genes for black lemma (B, located on chromosome 1H), pubescent leaf blade (Pub, 3H), hairy leaf sheath (Hs, 4H) and hooded lemma (K, 4H) were expressed in the F-1 hybrids, but generally to a lesser extent than in the parental barley accessions. F-1 hybrids having two copies of the B or Hs genes showed more pronounced phenotypes. In backcrossed progenies, each of which had a single copy of the barley marker gene in a hexaploid wheat background, the B and K phenotypes were less pronounced than in the F, hybrids, and the Pub phenotype was not observed. These four genes appear to be expressed in proportion to their dosage relative to the ploidy levels of the wheat background. The remaining three marker genes, brittle rachis (Bt-Bt2, 3H), blue aleurone (Pi, 4H) and short-upper-leaves (SuI) did not appear to express their characteristic phenotypes in any of the respective hybrids. Possible causes for reduced expression or complete suppression of the dominant barley genes in the wheat-barley hybrids are discussed. Dominant barley marker genes which are expressed in the hybrids would be useful for manipulating barley chromosomes in wheat backgrounds.

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  • C-banding analysis on wild Emmer (Triticum dicoccoides Korn) strains with and without spontaneous reciprocal translocations 査読

    S Taketa, T Kawahara

    THEORETICAL AND APPLIED GENETICS   92 ( 2 )   173 - 178   1996年2月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:SPRINGER VERLAG  

    C-banding polymorphism was analyzed in eight strains of wild Emmer, Triticum dicoccoides Korn, which included six translocation homozygotes reported previously. Polymorphisms were detected in all of the strains examined, and the breakpoints of five spontaneous translocations were successfully identified by C-bands. Of the eight breakpoints that could be precisely identified, one was located in the centromeric region while the remaining seven were located in proximal to distal euchromatic regions. The two breakpoints of one translocation could only be approximately localized to proximal regions due to the scarcity of C-bands. The present results are in contrast with those observed on T. araraticum, another wild tetraploid wheat belonging to the Timopheevi group, in which most of the breakpoints were located in centromeric regions. In T. dicoccoides, the six translocation chromosome types were derived from the standard karyotype primarily by a mechanism other than centric breakage-fusion.

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  • CHROMOSOME CONSTITUTION OF WHEAT × BARLEY HYBRIDS AND THEIR BACKCROSS PROGENY, AND EXPRESSION OF BARLEY GENES

    TAKETA S., TAKEDA K.

    The Japanese journal of genetics   70 ( 6 )   716 - 716   1995年12月

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  • High crossability of wild barley (Hordeum spontaneum C. Koch) with bread wheat and the differential elimination of barley chromosomes in the hybrids 査読

    S Taketa, J Kato, K Takeda

    THEORETICAL AND APPLIED GENETICS   91 ( 8 )   1203 - 1209   1995年12月

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    記述言語:英語   掲載種別:研究論文(学術雑誌)   出版者・発行元:SPRINGER VERLAG  

    Four bread wheat (Triticum aestivum L.) cultivars,'Aobakomugi', 'Chinese Spring', 'Norin 61' and 'Shinchunaga', were pollinated with five barley lines/cultivars consisting of three cultivated barley (Hordeum vulgare L.) lines, 'Betzes', 'Kinai 5' and OHL089, and two wild barley (Hordeum spontaneum C. Koch) lines, OUH602 and OUH324. Crossability, expressed as the percentage of embryo formation, varied from 0 to 55.4% among the cross combinations. The two wild barley lines generally had a higher crossability than the previously reported best pollinator, 'Betzes', and some Japanese wheat cultivars were better as the female parent than;Chinese Spring'. Ninety four hybrid plants were obtained from 250 embryos cultured, and their somatic chromosome numbers ranged from 21 to 36. Eighteen plants were mosaic in chromosome number. Twenty one-chromosome plants appeared most frequently (45.7%) followed by 28-chromosome plants (14.9%). C-banding analysis revealed that elimination of barley chromosomes was mainly responsible for the occurrence of aneuploid plants. In hypoploids derived from 'Betzes'-crosses, chromosome 5 was preferentially eliminated as previously reported, while in hypoploids derived from OUH602-crosses, chromosome 4 was preferentially eliminated. The wild barley line OUH602 may be a useful parent for producing a new wheat-barley addition set because of its high crossability with wheat and a different pattern of chromosome elimination.

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書籍等出版物

  • 植物育種学辞典,日本育種学会編

    培風館  2005年 

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  • Taketa, S, Linde-Laursen, I. and Künzel, G.. Cytogenetic diversity in barley (Hordeum vulgare). In: Diversity in barley, edited by R. von Bothmer, H. Knüpffer, T. van Hintum and K. Sato

    2003年 

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MISC

  • 植物科学とサイエンスコミュニケーション 招待

    武田 真

    岡山大学附属図書館報 楷   77   2 - 5   2023年10月

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    担当区分:筆頭著者   記述言語:日本語   掲載種別:記事・総説・解説・論説等(その他)  

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  • 観賞用オオムギの開発に利用可能な遺伝子源 招待

    武田 真

    アグリバイオ   6 ( 9 )   867 - 868   2022年8月

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  • オオムギの穂を白くする遺伝子と光合成 招待

    武田 真

    アグリバイオアグリバイオ   5 ( 14 )   54 - 55   2021年12月

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    担当区分:筆頭著者, 責任著者  

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  • P067 オオムギ属植物における防御関連二次代謝産物の分布(ポスター発表,植物化学調節学会第50回大会)

    宇部 尚樹, 西坂 美穂, 武田 真, 石原 亨

    植物化学調節学会研究発表記録集   50   85 - 85   2015年10月

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    記述言語:日本語   出版者・発行元:植物化学調節学会  

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  • オオムギのプロアントシアニジン欠失突然変異体(ant突然変異体)を利用した種子色が種子休眠に及ぼす影響について

    氷見英子, 武田真, 前川雅彦

    育種学研究   14   119   2012年9月

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    記述言語:日本語  

    J-GLOBAL

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  • 水稲品種オオチカラ由来の短根性準同質遺伝子系統IL-srt1における地上部地下部関係(日本作物学会四国支部第42回講演会講演要旨)

    趙 仁貴, 劉 建, 塩津 文隆, 豊田 正範, 楠谷 彰人, 武田 真, 一井 眞比古

    日本作物学会四国支部会報   ( 42 )   18 - 19   2005年12月

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    記述言語:日本語   出版者・発行元:日本作物学会  

    CiNii Article

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  • 水稲品種オオチカラ由来の突然変異体系統IL-srt1の生理的特性(日本作物学会四国支部第41回講演会講演要旨)

    趙 仁貴, 劉 建, 塩津 文隆, 中北 剛, 豊田 正範, 楠谷 彰人, 武田 真, 一井 眞比古

    日本作物学会四国支部会報   ( 41 )   18 - 19   2004年12月

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    記述言語:日本語   出版者・発行元:日本作物学会  

    CiNii Article

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  • コムギとオオムギの属間交雑およびオオムギ属の系統分化に関する細胞遺伝学的研究.

    武田 真

    育種学研究5   5   109 - 116   2003年

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  • オオムギ裸性遺伝子に密接に連鎖した分子マーカーの開発

    菊池 慎一, 武田 真, 川崎 信二, 一井 眞比古

    育種学研究 = Breeding research   4   271 - 271   2002年8月

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  • イネ無側根突然変異体Lrt1における側根発生および根重力屈性へのオーキシンの影響

    チュン トーリ, 武田 真, 一井 眞比古

    育種学研究 = Breeding research   4   354 - 354   2002年8月

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  • 縦列型反復配列Afaファミリーの塩基配列に基づくHordeum属の系統解析

    長田 雅之, 武田 真, 一井 眞比古

    育種学研究 = Breeding research   4   397 - 397   2002年8月

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  • イネのケイ酸吸収に関わる遺伝子のマッピング

    有村 元宏, 武田 真, 馬 建鋒, 呉 国峰, 玉井 一規, 一井 眞比古

    育種学研究 = Breeding research   4 ( 1 )   73 - 73   2002年3月

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  • アルカリ土壌耐性イネ品種の育成に関する研究 (1) 炭酸ナトリウム耐性の遺伝的変異

    一井 眞比古, 中川 康宏, 武田 真

    育種学研究 = Breeding research   2 ( 2 )   182 - 182   2000年9月

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  • コムギの圃場出穂期に及ぼす春播性遺伝子 (Vrn-D1) の影響

    加藤 裕美, 武田 真, 坂 智広, 入来 規雄, 村井 耕二

    育種学研究 = Breeding research   2 ( 2 )   238 - 238   2000年9月

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  • 無根毛イネ突然変異体の育成とその特性

    一井 眞比古, 河村 裕行, 楊 連群, 武田 真

    育種学研究 = Breeding research   2 ( 1 )   137 - 137   2000年4月

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  • コムギ-野生オオムギ(Hordeum vulgare ssp. spontaneum (C. Koch.) Thell.)染色体添加系統シリーズの育成

    武田 真, 武田 和義

    育種学研究 = Breeding research   2 ( 1 )   150 - 150   2000年4月

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  • インド型イネの雄性不稔系統と維持系統を識別するRAPDマーカーはミトコンドリアに由来する

    洪 徳林, 武田 真, 一井 眞比古

    育種学研究 = Breeding research   2 ( 1 )   182 - 182   2000年4月

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  • コムギの出穂特性に及ぼすオオムギ5H添加染色体の効果

    河原 友子, 武田 真, 村井 耕二

    育種学研究 = Breeding research   2 ( 1 )   218 - 218   2000年4月

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  • 根毛量に関するイネ突然変異体の特性解析(予報)

    一井 眞比古, 河村 裕行, 武田 真

    根の研究 = Root research   8 ( 4 )   135 - 135   1999年12月

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講演・口頭発表等

  • オオムギの白穎突然変異体

    2023年10月9日 

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    開催年月日: 2023年10月9日 - 2023年10月10日

    記述言語:英語  

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  • Barley albino lemma 1 mutations reduce spike photosynthesis and seed weight

    Shin Taketa

    The 13th Triennial Meeting of the International Society for Seed Science  2021年8月9日 

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    開催年月日: 2021年8月13日

    記述言語:英語   会議種別:口頭発表(一般)  

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  • オオムギのプロアントシアニジン欠失突然変異体(ant突然変異体)を利用した種子色が種子休眠に及ぼす影響について

    氷見英子, 武田真, 前川雅彦

    育種学研究  2012年9月14日 

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    開催年月日: 2012年9月14日

    記述言語:日本語  

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  • Isolation and structural analyses of seed-specific polyphenol oxidase genes in barley

    Kanako Matsuki, Satoko Amano, Eiko Himi, Kazuhiko Noda, Kazuyoshi Takeda, Shin Taketa

    GENES & GENETIC SYSTEMS  2007年12月  GENETICS SOC JAPAN

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    開催年月日: 2007年12月

    記述言語:英語  

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  • 植物としてのコムギ

    武田 真

    日本作物学会講演会要旨集  2006年  日本作物学会

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    開催年月日: 2006年

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  • エピゲノム制御を介したオオムギの芒形成機構の解析

    中村光希, 菊池優一, 白神美瑞穂, 小竹敬久, 武田真, 池田陽子

    日本育種学会第144回講演会, 神戸  2023年9月16日 

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    記述言語:日本語  

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  • エピゲノム制御が担うオオムギの芒形成

    中村光希, 菊池優一, 白神美瑞穂, 小竹敬久, 武田真, 池田陽子

    第1回植物生理若手の会, 千葉  2023年8月9日 

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    記述言語:日本語  

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  • オオムギの芒形成を担うエピゲノム制御因子

    中村光希, 菊池優一, 白神美瑞穂, 小竹敬久, 武田真, 池田陽子

    第64回日本植物生理学会,仙台(ハイブリッド)  2023年3月10日 

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    記述言語:日本語  

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  • ジーンバンクに保存されているオオムギ遺伝資源は遺伝子単離のみならず、育種の前過程で不可欠である 招待

    Taketa, Shin

    2023年2月2日 

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    記述言語:英語   会議種別:口頭発表(招待・特別)  

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  • オオムギ・コムギの芒の長さを決める遺伝子

    武田 真

    イネ科作物の穂先突起の形態を制御する遺伝子 岡山大学植物研 共同研究拠点ワークショップ  2022年12月21日 

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    記述言語:日本語   会議種別:シンポジウム・ワークショップ パネル(指名)  

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  • オオムギ葉身形成におけるWOX3遺伝子の機能解析

    吉川貴徳, 久野 裕, 桧原健一郎, Jilu Nie, 田中裕己, 伊藤純一, 武田 真

    ムギ類研究会  2022年12月17日 

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    会議種別:ポスター発表  

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  • オオムギの芒形成に関わる推定エピゲノム制御因子の解析

    中村光希, 菊池優一, 白神美瑞穂, 武田 真, 池田陽子

    NGS発生生物学現場の会2022  2022年12月16日 

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    会議種別:ポスター発表  

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  • Functional characterization of a putative epigenetic regulator that affects awn elongation in barley

    Nakamura, K., Kikuchi, Y., Shiraga, M., Kotake, T., Taketa, S., Ikeda, Y.

    CHSA meeting on Integrative Epigenetics in Plants  2022年12月15日 

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    記述言語:英語   会議種別:ポスター発表  

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  • オオムギの芒形成に関わるエピゲノム制御因子の解析

    中村光希, 菊池優一, 白神美瑞穂, 小竹敬久, 武田 真, 池田陽子

    日本植物学会第86回大会  2022年9月15日 

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    会議種別:ポスター発表  

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  • オオムギ丸粒突然変異体の遺伝解析

    武田 真, 白神美津穂, 大関美香, 五月女敏範

    日本育種学会第141回大会  2022年3月20日 

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    会議種別:口頭発表(一般)  

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  • オオムギ内穎裂開突然変異体の解析

    武田 真, 五月女敏範, 吉川貴徳

    日本育種学会第139回講演会  2021年9月23日 

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  • オオムギ白穎(albino lemma 1)変異は、GLK2転写因子の異常で引き起こされ、種子重を低下させる

    武田 真, 服部桃子, 高見常明, 坂本 亘

    日本育種学会第139回講演会  2021年3月19日 

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  • オオムギ 多節矮性変異体を用いた葉間期制御に関わる3遺伝子座の同定

    桧原 健一郎, 味谷雅之, 桧原(松尾, 直子, 三村真生, 吉川貴徳, スズキマサハル, 草場 信, 武田 真, 伊藤 純一

    日本育種学会第139回講演会  2021年3月 

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  • オオムギにおけるフラボノイド型ファイトアレキシン

    宇部尚樹, 勝山由郁, 假谷佳祐, 手林慎一, 武田真, 上野琴巳, 石原亨

    日本農芸化学会中四国支部大会  2020年9月 

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  • オオムギ MANY-NODED DWARF遺伝子群による葉間期制御

    桧原 健一郎, 武田 真, 伊藤 純一

    日本育種137回講演会 コロナのため中止で、要旨のみ発表  2020年 

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  • 醸造特性の異なるビール大麦2品種の未熟種子における転写産物のRNA-seq解析 招待

    武田 真, 高橋秀和, 持田恵一, 石毛太一郎, 矢嶋俊介

    東京農業大学 生物資源ゲノム解析拠点 研究報告会  2019年2月15日 

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  • イネとオオムギの形態の違い

    武田 真

    日本育種学会2018年秋期ワークショップ  2018年9月22日 

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    会議種別:シンポジウム・ワークショップ パネル(公募)  

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共同研究・競争的資金等の研究

  • ビール大麦の水感受性因子をターゲットとした遺伝子解析

    2023年07月 - 2024年06月

    ビール酒造組合 共同研究費 

    武田真

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    担当区分:研究代表者 

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  • オオムギ縞萎縮病の新規抵抗性遺伝子の単離と機能解明

    研究課題/領域番号:23H02184  2023年04月 - 2027年03月

    日本学術振興会  科学研究費助成事業  基盤研究(B)

    武田 真

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    配分額:16770000円 ( 直接経費:12900000円 、 間接経費:3870000円 )

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  • オオムギの健康性分である水溶性食物繊維(βーグルカン)を高める遺伝子の解明

    研究課題/領域番号:13  2022年10月 - 2023年09月

    両備てい園記念財団  生物学研究奨励賞 

    武田 真

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    担当区分:研究代表者 

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  • ビール大麦の品質・生産性向上のための遺伝育種学的多様性の研究

    2022年06月 - 2023年05月

    ビール酒造組合 

    武田 真

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  • コムギ長葉毛遺伝子の単離と発現解析

    研究課題/領域番号:31C2001  2022年04月 - 2023年01月

    鳥取大学乾燥地研究センター 

    武田 真

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    担当区分:研究代表者 

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  • 土壌伝染性ウイルスで起こる「大麦縞萎縮病」に対するオオムギ抵抗性遺伝子の多様性解析

    2020年09月 - 2021年03月

    八雲環境科学財団 令和2年度助成  令和2年度環境研究助成  特定研究

    武田 真

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    担当区分:研究代表者  資金種別:競争的資金

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  • オオムギの芒が葉に転換する変異体の遺伝生理学的解析

    研究課題/領域番号:19K05971  2019年04月 - 2022年03月

    日本学術振興会  科学研究費助成事業 基盤研究(C)  基盤研究(C)

    武田 真

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    配分額:4420000円 ( 直接経費:3400000円 、 間接経費:1020000円 )

    オオムギの穂先の突起である芒は、鳥獣害を防ぎ、光合成を行うことから、農業生産上極めて重要な役割を担う。オオムギはイネ科作物の中で最も構造が発達した芒を有する特徴がある。芒は種子を外側から包み込む組織である外穎の先端が伸長してできた器官と考えられている。芒は葉が変形して形成されたと考えられるが、芒の組織学的な起源や葉から芒への転換を起こす分子メカニズムに関しては不明な点が多い。本研究では、オオムギにおいて、芒が葉に先祖返りした突然変異体である葉状外穎変異体(leafy lemma)の原因遺伝子を分子遺伝学的に特定し、その機能を解明し、葉が芒に転換する機構を解明することを目的とする。
    オオムギのleafy lemma突然変異体は3つの遺伝子が組合さって表現型が現れることを、交雑実験により解明した。これは、正常芒の原品種とleafy lemma (lel)変異体の交雑F2世代では(1/4)x(1/4)x(1/4)=1/64に統計学的に適合する頻度でleafy lemma変異体が出現したためである。独立の3個の劣性遺伝子がホモ接合体で揃うことにより、芒の葉への転換が起こるとみられた。そのうちの1遺伝子は短芒遺伝子であることが対立性検定により判明した。この遺伝子は花器の形態形成で重要な役割を担うことが他の植物で報告されており、転写因子である。
    残る2遺伝子を特定するために、短芒遺伝子は固定で、2遺伝子が分離する集団を用いてマッピングを行った。その結果、それぞれの遺伝子は2H染色体長腕と4H染色体長腕に位置することが判明した。2H-lel因子と4H-lel因子がそれぞれ単独で1遺伝子分離する遺伝実験集団を用いて詳細なマッピングを行い、候補遺伝子の絞り込みを遂行している。

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  • オオムギ白穎変異体を利用した穂の光合成量の遺伝生理学的解析

    研究課題/領域番号:16K07556  2016年04月 - 2019年03月

    日本学術振興会  科学研究費助成事業 基盤研究(C)  基盤研究(C)

    武田 真

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    配分額:4810000円 ( 直接経費:3700000円 、 間接経費:1110000円 )

    オオムギ白穎albino lemma 1(alm1)変異体は穂の内外穎がアルビノ化する特異な表現型を示し、単一の劣性核遺伝子に支配されることが知られている。穎以外に、節、果皮および株基部も白化するが、葉身や芒は正常な緑色で正常に生育する。本研究では白穎遺伝子の遺伝マッピングと自然および誘発alm1変異体の遺伝子解析を行い、白穎変異体の原因遺伝子を解明した。さらに、alm1変異体と正常型で、穂および葉身の光合成量および収量関連形質を調査し、穂での光合成が粒重に10-20%程度貢献することを明らかにした。

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  • オオムギの芒の形態を支配する遺伝子の単離と解析

    研究課題/領域番号:25450008  2013年04月 - 2016年03月

    日本学術振興会  科学研究費助成事業  基盤研究(C)

    武田 真

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    配分額:5200000円 ( 直接経費:4000000円 、 間接経費:1200000円 )

    穂の先端の針状突起である芒は、オオムギでよく発達している。鳥獣による食害防止、種子の散布や土壌への埋没の役割があるだけでなく、葉緑体を有し活発に光合成し、種子に光合成産物を直接に輸送し、収量に10-30%の貢献があるとされる。しかし、芒が長すぎると降雨の際に水滴が付着しやすく、植物体が倒れたり、カビ害が発生する。そのため芒の長さを適切に制御する遺伝子の特定が重要である。本研究では遺伝子の染色体上の位置を決定し、イネ科のモデル植物であるイネとの比較から短芒遺伝子scaの候補遺伝子を探索した。

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  • オオムギにおけるβグルカン合成酵素遺伝子の単離と機能解析

    研究課題/領域番号:21580007  2009年 - 2011年

    日本学術振興会  科学研究費助成事業  基盤研究(C)

    武田 真, 塔野岡 卓司, 円谷 陽一, 春山 直人

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    配分額:4810000円 ( 直接経費:3700000円 、 間接経費:1110000円 )

    (1, 3 ; 1, 4)-β-D-グルカンはイネ科の組織で高濃度でみられ、特にオオムギの細胞壁多糖の主要な成分である血糖値や血中コレステロール濃度を下げるなど健康効果がある。我々は、オオムギのゲノム中にある7種類のβグルカン合成酵素様遺伝子のうち、HvCslF6が主要な合成酵素であることを明らかにした。

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  • オオムギにおける穀粒の皮裸性の発現機構に関する分子遺伝学的解析

    研究課題/領域番号:18580006  2006年 - 2008年

    日本学術振興会  科学研究費助成事業  基盤研究(C)

    武田 真

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    配分額:3750000円 ( 直接経費:3300000円 、 間接経費:450000円 )

    通常のオオムギは, 脱穀しても実と殻が糊物質で接着していて分離できない, "皮麦"である。しかし, 一部のオオムギは, 頴果と頴が容易に分かれる変種で,"はだか麦"とよばれる。オオムギの頴果が皮性・裸性のどちらになるかは, 単一の遺伝子座で決まる単純なメンデル遺伝に従い, 皮性が裸性に対して優性である。オオムギの重要形質の1つである皮性・裸性を決める遺伝子の分子的な実体はこれまで不明であり, 実と殻が接着したり, 分離する機構も全くわかっていなかった。われわれのグループはポジショナルクローニングにより, オオムギの皮性・裸性の表現型を制御する遺伝子がERF転写因子であることを世界で初めて明らかにした。

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  • イネのケイ酸吸収機構の分子遺伝学的解析

    研究課題/領域番号:15380007  2003年 - 2006年

    日本学術振興会  科学研究費助成事業  基盤研究(B)

    一井 眞比古, 武田 真

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    配分額:10200000円 ( 直接経費:10200000円 )

    イネ品種オオチカラのアジ化ナトリウム処理により低ケイ酸突然変異系統(GR1)を誘発した.分子マーカーを用いた遺伝マッピングによる,GR1の低ケイ酸含有量は第2染色体長腕に位置する劣性単一遺伝子(Lsi)に支配されることが明らかになった.
    圃揚で慣行法に従って栽培したオオチカラおよびGR1の成熟期における植物体の各種成分を器官別に分析した.その結果,GR1のケイ酸含量(%)は原品種の11〜43%に低下していることがわかった.しかし,GR1ではリグニン含量がオオチカラの約1.2〜1.4倍に増加しており,ケイ酸含量の低下による植物体の強度の低下をリグニン含量の増加によって補償している可能性が示唆された.
    幼苗におけるいもち病抵抗性を調査したところ,GR1は原品種オオチカラよりもいもち病斑が多いことが明らかになった.さらに,圃場栽培した材料をもちい,セジロウンカならびにコブノメイガの被害をみたところ,コブノメイガの食害を受けた葉の枚数がGR1において有意に多いことが明らかになった.
    圃場で栽培したときの乾物収量はオオチカラが1068kg/10aであったのに対し,GR1の乾物収量は1090kg/10aで,両者の間に有意差は認められなかった.
    ホールクロップサイレージを調整し,飼料としての化学成分ならびに牛に給餌したときの消化率を調査した.GR1突然変異体のケイ酸含有率はオオチカラの約1/7に減少していたにも拘わらず,消化特性においては原品種オオチカラとの間に顕著な差異は認められなかった.この原因として,GR1において消化が困難なリグニン含量が増加していたことが考えられる.
    ケイ酸の吸収機構を調査するための材料として,イネの根に関する突然変態を多数選抜し,特性解析を行った.ケイ酸は主に測根から吸収され,根毛はほとんどケイ酸の吸収に寄与しないことが明らかになった.

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  • 分子遺伝学的手法によるオオムギ皮裸性遺伝子の単離

    研究課題/領域番号:15580007  2003年 - 2005年

    日本学術振興会  科学研究費助成事業  基盤研究(C)

    武田 真

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    配分額:3900000円 ( 直接経費:3900000円 )

    オオムギにおいて種子の皮裸性は収穫産物の用途を規定する重要な形質である.皮ムギは醸造ならびに飼料用に用いられるのに対し,裸ムギは加工が容易で主に食用に用いられる.本研究の目的はオオムギの種子の皮裸性を決定する遺伝子を単離し,その機能を解明することである.まず,AFLP法とバルク法を併用し,裸性遺伝子座に密接に連鎖するAFLPバンドをスクリーニングした.得られた連鎖バンドの配列をもとに多型性を示すPCRマーカーを裸性遺伝子座の両側に設定することができた.次に,開発したPCRマーカーを用いて裸性品種と皮性品種の5組合せの交雑に由来する分離集団2,380個体を調査し,裸性遺伝子を2つのマーカーの間にそれぞれ0.6cMおよび0.06cMの遺伝距離でマッピングした.さらに,データベース検索により裸性遺伝子座がイネ第6染色体長腕領域とマイクロシンテニーを示すことを見いだし,イネゲノム配列情報を利用して裸性遺伝子座の絞り込みを進めた.さらに,裸性遺伝子座に密接に連鎖するマーカーをプローブとしてオオムギ品種はるな二条BACライブラリーをスクリーニングし,同遺伝子座をカバーする約500bpからなる物理地図を構築した.この過程で,皮裸性遺伝子の有力な候補遺伝子を見いだした.RT-PCR法およびmRNA in situハイブリダイゼーションにより候補遺伝子の発現解析を行ったところ,開花後1週間の頴果の種皮において高い発現が認められた.

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  • 分子細胞学的手法によるオオムギ野性種の系統分化の解析

    研究課題/領域番号:09760006  1997年 - 1998年

    日本学術振興会  科学研究費助成事業  奨励研究(A)

    武田 真

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    配分額:1700000円 ( 直接経費:1700000円 )

    今年度はオオムギ属倍数種(四倍種および六倍種)について二種類のリポソームRNA遺伝子、5Sおよび18S-25SrDNAの物理マッピングを行い、オオムギ属倍数種の系統進化の解明を試みた。rDNAのパターンから以下のことが結論される。(1)栽培オオムギと同じゲノムを持つとされるH.bulbosumの四倍体は同質四倍体である。(2)Yゲノムを持つH.murinumの六倍体は四倍体と二倍体のサイトタイプの交雑によって成立したと考えられる。 (3)Xゲノムを持つH.marinumの四倍体は単純な同質四倍体ではなく、部分異質四倍体である。(4)四倍種のH.capense,H.secalinumおよび六倍種のH.brachyantherum6xにはXゲノムが含まれる。(5)北アメリカ大陸に分布するH.jubatumは5対の染色体にrDNAのシグナルを持ち、アジア大陸のH.roshevitziiとH.brachyantherum2xの交雑によって成立したと推定される。また、中央アメリカに分布するH.guatemalenseおよび南アメリカ大陸に分布するH.fuegianumはH.jubatumに近縁と考えられる。(6)北アメリカ大陸に分布するH.depressumは4対の染色体にだけrDNAシグナルを持ち、二倍種のH.intercedensとH.pusillumの交雑から起源したと推定される。(7)北アメリカ大陸の六倍種であるH.arizonicumはH.jubatulmとH.pusillumの交雑に由来すると推定される。
    従来オオムギ属は二倍体に見出される,H,I,XおよびYの4基本ゲノムに対応する4グループに分類されていた。しかし、本研究から、HゲノムとXゲノムを併せ持つ第5のグループが存在することが実証された。さらに、これまで推定困難であった倍数種の祖先種についてもかなり明確に推定することができた。これらのことから、rDNAはオオムギ属の系統進化を解明するのに有用な染色体マーカーであると結論される。

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  • 染色体工学的手法によるコムギにオオムギ第5染色体を添加した系統の育成

    研究課題/領域番号:08760006  1996年

    日本学術振興会  科学研究費助成事業  奨励研究(A)

    武田 真

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    配分額:1000000円 ( 直接経費:1000000円 )

    まず、不稔遺伝子の染色体上での物理的位置を推定するため、オオムギ第5染色体(1H)長腕の関与する相互転座系統(3系統)とコムギとの交雑から、転座第5染色体をコムギに導入した系統を育成し、切断点と稔性との関係を検討した。その結果、第5染色体長腕の動原体から約50%までの領域を導入した系統は正常な種子稔性を示すこと、また、第5染色体の長腕の末端から5%が他の染色体(第2染色体)に転座した染色体を添加しても種子稔性は正常であることがわかった。これらのことから、オオムギ第5染色体上の不稔を引き起こす遺伝子は長腕上の50〜95%の領域に位置することが明らかになった。次に、第5染色体によって誘発される不稔性は、オオムギ第6染色体(6H)によって部分的に緩和されることがわかっているが、その不稔緩和遺伝子は第6染色体の長腕に存在することを明らかにした。このように、第5染色体長腕の動原体から50%の領域および末端から5%の領域をコムギに導入することに成功した。現在、導入された第5染色体領域を容易に検出できる分子マーカーを検索中である。
    さらに、エギロプス(Aegilops)属由来の配偶子致死染色体の持つ染色体切断作用を利用して、不稔遺伝子を除去するための実験系統を育成した。この系統はオオムギの第5及び第6染色体に加えて配偶子致死染色体を1本ずつ持ち、雌性稔性がある。現在、戻し交雑後代の細胞学的調査によって不稔遺伝子を含むできるだけ小さい部分の欠失を起こした染色体の選抜を試みている。

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  • 分子細胞学的手法による新たなオオムギ染色体マーカーの創出

    研究課題/領域番号:07760004  1995年

    日本学術振興会  科学研究費助成事業  奨励研究(A)

    武田 真

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    配分額:1000000円 ( 直接経費:1000000円 )

    本研究では、オオムギの新たな染色体マーカーを分染法および分子細胞学的手法によって創出することを試みた。
    まず、野生オオムギ(Hordeum spontaneum)および栽培オオムギ(Hordeum vulgare)を各3系統供試し、C-分染法によるバンドパターンの変異を調査した。その結果、野生オオムギは3系統とも第5染色体短腕の中部に栽培オオムギではみられない鮮明なバンドを持つことが明らかになった。野生オオムギと栽培オオムギとのF_1雑種の減数分裂第一中期の染色体をC-分染したところ、野生オオムギと栽培オオムギの第5染色体短腕間で正常に対合することがわかった。このことから野生オオムギの第5染色体短腕のバンドは構造異常ではなく、多型によって生じたものであることが明らかになった。
    次に、同一の染色体核板に対して分染とゲノミックin situハイブリダイゼーションを連続的に行う方法を、四倍性コムギの一種であるTriticum abyssinicumを材料として検討した。その結果、先にin situハイブリダイゼーションを行った標本をひき続いてN-分染する方法では、鮮明なN-分染像を得ることができなかった。しかし、先にN-分染を行い、脱染色してin situハイブリダイゼーションすると、良好なシグナルが得られることが明らかになった。
    さらに、コムギにオオムギ染色体が添加された系統を供試し、ゲノミックin situハイブリダイゼーション法を適用した。コムギの全DNAを無標識とし、オオムギの全DNAをビオチンで標識し、両者を約25:1の濃度比で混合したものをプローブとし、染色体標本にin situハイブリダイゼーションさせ、シグナルを蛍光検出した。その結果、オオムギ染色体とコムギ染色体を識別することができた。現在、混合する濃度比を変化させ、バンド状のパターンが得られないかどうかを検討している。

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  • ライコムギに導入されたDゲノム染色体断片の分子細胞遺伝学的手法による検出

    研究課題/領域番号:06760008  1994年

    日本学術振興会  科学研究費助成事業  奨励研究(A)

    武田 真

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    配分額:900000円 ( 直接経費:900000円 )

    本研究ではパンコムギとの交雑を経て育成されたライコムギ系統を蛍光in situハイブリダイゼーション法によって解析し,Rゲノム染色体とDゲノム染色体との間の転座染色体を検出することを試みた.
    まず,3D染色体短腕と3R染色体長腕とからなる転座染色体のin situハイブリダイゼーション法による検出を試みた.ライムギ(Secale cereale,Rゲノム)とDゲノムの提供親であるタルホコムギ(Aegilops squarrosa)それぞれの全DNAを抽出し,RあるいはDゲノムいずれかの全DNAをビオチンで標識し,他方の全DNAを無標識のまま約50倍量加えてin situハイブリダイゼーションを行ったところ,転座染色体を明瞭に検出できた.つぎに,染色体対合の分析から転座を持つことはわかっているが,転座点が同定できていないライコムギ系統Bronco 90をin situハイブリダイゼーション法で解析した。タルホコムギの全DNAをビオチン標識しライムギの全DNAを無標識のまま加えてin situハイブリダイゼーションを行ったところ,1対のライムギ染色体の長腕の末端よりの約1/10の部分にシグナルが認められ,この部分がDゲノム由来であることがわかった.しかし,逆の標識を行った場合にはこの転座は検出できなかった.したがって,in situハイブリダイゼーション法は,プローブの標識を適切に行えば,微少な転座でも切断点を正確に同定できることが明らかになった.

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担当授業科目

  • 植物ゲノム解析学演習 (2023年度) 前期  - その他

  • 植物ゲノム解析学演習 (2023年度) 後期  - その他

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  • 植物ゲノム解析学特別演習 (2023年度) 通年  - その他

  • 植物多様性遺伝学 (2023年度) 前期  - 木5~8

  • 植物多様性遺伝学 (2023年度) 前期  - 木5~8

  • 植物遺伝資源機能解析学 (2023年度) 後期  - その他

  • 植物遺伝資源機能解析学 (2023年度) 後期  - その他

  • 特別研究 (2023年度) その他  - その他

  • 生物資源科学特別研究 (2023年度) その他  - その他

  • 生物資源科学特別研究 (2023年度) 通年  - その他

  • 植物ゲノム解析学演習 (2022年度) 前期  - その他

  • 植物ゲノム解析学演習 (2022年度) 後期  - その他

  • 植物ゲノム解析学演習 (2022年度) 後期  - その他

  • 植物ゲノム解析学演習 (2022年度) 前期  - その他

  • 植物多様性遺伝学 (2022年度) 前期  - 木5~8

  • 植物遺伝資源機能解析学 (2022年度) 後期  - その他

  • 生物資源科学特別研究 (2022年度) その他  - その他

  • 生物資源科学特別研究 (2022年度) 通年  - その他

  • 植物ゲノム解析学演習 (2021年度) 前期  - その他

  • 植物ゲノム解析学演習 (2021年度) 後期  - その他

  • 植物ゲノム解析学演習 (2021年度) 後期  - その他

  • 植物ゲノム解析学演習 (2021年度) 前期  - その他

  • 植物多様性遺伝学 (2021年度) 前期  - 木5~8

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  • 生物資源科学特別研究 (2020年度) 通年  - その他

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社会貢献活動

  • 青陵高校生に対面で研究紹介20分を2回

    役割:実演

    岡山大学資源植物科学研究所  2022年7月27日

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    種別:その他

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メディア報道

  • Uncoverign the 150-year history of Japanese beer barley breeding (日本ビール大麦育種の150年の歴史をひもとく) インターネットメディア

    EurekAlert ! AAAS News Release 19-Dec-2023  2023年12月

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  • 光合成関与 遺伝子確認 新聞・雑誌

    山陽新聞  20面  2022年1月24日

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    執筆者:本人以外 

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