Cornell University   Visiting Fellow

1994.5 - 1995.3

Okayama University   Medical School   Assistant Professor ("Joshu" in Japanese)

1989.4 - 2001.3

JAPANESE SOCIETY FOR BIOINFORMATICS

SIG-BIO

日本ゲノム微生物学会

Kanto Branch of The Mycological Society of Japan

CHEM-BIO INFORMATICS SOCIETY

A new metabolite of propargylglycine, gamma-glutamylpropargylglycylglycine, in liver of D,L-propargylglycine-administered rats Reviewed

J Ohta, T Ubuka, H Kodama, K Sugahara, N Nagamine

BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS   1334 ( 2-3 )   240 - 246   1997.3

INCREASE IN CYSTATHIONINE CONTENT IN RAT-LIVER MITOCHONDRIA AFTER D,L-PROPARGYLGLYCINE ADMINISTRATION Reviewed

J OHTA, T UBUKA, H KODAMA, K SUGAHARA, K YAO, N MASUOKA, M KINUTA

AMINO ACIDS   9 ( 2 )   111 - 122   1995

Single-atom tracing in metabolic networks with symmetric metabolites

OHTA Jun

IPSJ SIG Technical Reports   2025-BIO-81 ( 2 )   1 - 3   2025.2

Activity ratios of atomic-level pathways calculated by single-atom tracing in a model network of carbohydrate metabolism

OHTA Jun

IPSJ SIG Technical Reports   2024-BIO-80 ( 10 )   1 - 4   2024.11

Atomic level mapping of stoichiometric metabolic network structure of elementary flux mode type metabolic pathways

OHTA Jun

IPSJ SIG Technical Reports   2024-BIO-79 ( 4 )   1 - 4   2024.8

Activity ratios of atomic-level pathways in metabolic networks: general calculation method for quantitative activity ratios and three possible types of semi-quantitative activity ratios

OHTA Jun

IPSJ SIG Technical Reports   2024-BIO-78 ( 39 )   1 - 7   2024.6

Activity ratios of atomic-level pathways in metabolic networks: semi-quantitative activity ratios and quantitative activity ratios

OHTA Jun

IPSJ SIG Technical Reports   2024-BIO-77 ( 30 )   1 - 5   2024.2

Activity ratio of metabolic pathways computed by single-atom tracing

OHTA Jun

IPSJ SIG Technical Reports   2023-BIO-76 ( 9 )   1 - 3   2023.11

Calculation of balance of metabolic pathways computed by single-atom tracing

OHTA Jun

IPSJ SIG Technical Reports   2023-BIO-75 ( 2 )   1 - 3   2023.8

Exploring for metabolic pathways based on stoichiometry

OHTA Jun

IPSJ SIG Technical Reports   2022-BIO-70 ( 59 )   1 - 3   2022.6

Non-branched linear substructures in stoichiometric metabolic network structures of elementary flux mode type pathways

OHTA Jun

IPSJ SIG Technical Reports   2022-BIO-69 ( 10 )   1 - 4   2022.3

Number of symmetries of stoichiometric metabolic network structure variant of elementary flux mode type pathway

OHTA Jun

IPSJ SIG Technical Reports   2021-BIO-68 ( 4 )   1 - 3   2021.11

Stoichiometric metabolic network structure as a snapshot of the state of formation and utilization of metabolite molecules in elementary flux mode type pathway

OHTA Jun

IPSJ SIG Technical Reports   2021-BIO-66 ( 22 )   1 - 7   2021.6

Calculation of stoichiometric metabolic network structure of elementary flux mode type metabolic pathway: Optimization of algorithm for difference judgement between calculated network structures

OHTA Jun

IPSJ SIG Technical Reports   2021-BIO-65 ( 4 )   1 - 8   2021.3

Calculation of stoichiometric metabolic network structure of elementary flux mode type metabolic pathway: Acceleration of difference judgement between calculated network structures

OHTA Jun

IPSJ SIG Technical Reports   2020-BIO-64 ( 5 )   1 - 7   2020.11

Accelerating calculation of stoichiometrically balanced metabolite-level network structure of elementary flux mode type metabolic pathway

OHTA Jun

IPSJ SIG Technical Reports   2020-BIO-63 ( 1 )   1 - 7   2020.8

Calculation of stoichiometrically balanced metabolite-level network structure of elementary flux mode type metabolic pathway

OHTA Jun

IPSJ SIG Technical Reports   2020-BIO-62 ( 3 )   1 - 6   2020.6

Complete atomic-level mapping of elementary flux mode-type metabolic pathways through metabolites with symmetry

OHTA Jun

IPSJ SIG Technical Report   2020-BIO-61 ( 9 )   1 - 8   2020.3

Acceleration of complete atomic-level mapping of elementary flux mode-type metabolic pathways

OHTA Jun

IPSJ SIG Technical Report   2019-BIO-60 ( 6 )   1 - 7   2019.11

Complete atomic-level mapping of elementary flux mode type pathways in metabolic networks

OHTA Jun

IPSJ SIG Technical Report   2019-BIO-59 ( 2 )   1 - 6   2019.9

Computation of atomic-level pathways for complete biosynthesis in metabolic networks

OHTA Jun

IPSJ SIG Technical Report   2019-BIO-58 ( 59 )   1 - 6   2019.6

Convergence of isotopomer distribution simulation in metabolic networks

OHTA Jun

IPSJ SIG Technical Report   2019-BIO-57 ( 1 )   1 - 6   2019.3

Simulation of time course change of isotope distribution in metabolic networks

OHTA Jun

IPSJ SIG Technical Report   2018-BIO-56 ( 5 )   1 - 6   2018.12

EMU tracing: listing all the elementary metabolite units (EMU) which can be formed from source EMUs through a given metabolic network

OHTA Jun

IPSJ SIG Technical Report   2018-BIO-55 ( 6 )   1 - 7   2018.9

Isotopomer tracing: listing all the isotopomers synthesizable from source isotopomers through a given metabolic network

OHTA Jun

IPSJ SIG Technical Report   2018-BIO-54 ( 48 )   1 - 6   2018.6

Different effect of diastereoisomers of L-cystathionine sulfoxide on the stimulus coupled responses of human neutrophils Reviewed

Yosei Shimazaki, Jianying Zhang, Hiroshi Wakiguchi, Takanobu Kurashige, Yasuhiro Sagara, Noriyoshi Masuoka, Jun Ohta, Toshihiko Ubuka, Hiroyuki Kodama

Biochemical and Biophysical Research Communications   247 ( 2 )   387 - 391   1998.6

Characterization of hydrogen peroxide removal activities in mouse hemolysates: catalase activity and hydrogen peroxide removal activity by hemoglobin Reviewed

N Masuoka, M Wakimoto, J Ohta, K Ishii, T Nakano

BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE   1361 ( 2 )   131 - 137   1997.8

Identification of S-[2-carboxy-1-(1H-imidazol-4-yl)ethyl]-3-mercaptopyruvic acid with a metabolic intermediate between S-[2-carboxy-1-(1H-imidazol-4-yl)ethyl]-L-cysteine and S-[2-carboxy-1-(1H-imidazol-4-yl)ethyl]-3-mercaptolactic acid Reviewed

M Kinuta, H Shimizu, N Masuoka, J Ohta, WB Yao, T Ubuka

AMINO ACIDS   13 ( 2 )   163 - 169   1997

INCREASE IN TISSUE CYSTEINE LEVEL AND EXCRETION OF SULFATE AND TAURINE AFTER INTRAGASTRIC ADMINISTRATION OF L-2-OXOTHIAZOLIDINE-4-CARBOXYLATE IN RATS Reviewed

S YAMADA, T ABE, J OHTA, N MASUOKA, T UBUKA

AMINO ACIDS   8 ( 1 )   37 - 45   1995

HIGH-PERFORMANCE LIQUID-CHROMATOGRAPHIC DETERMINATION OF TAURINE AND HYPOTAURINE USING 3,5-DINITROBENZOYL CHLORIDE AS DERIVATIZING REAGENT Reviewed

N MASUOKA, K YAO, M KINUTA, J OHTA, M WAKIMOTO, T UBUKA

JOURNAL OF CHROMATOGRAPHY B-BIOMEDICAL APPLICATIONS   660 ( 1 )   31 - 35   1994.10

Inhibition of sulfate-forming activity in rat liver mitochondria by (aminooxy)acetate Reviewed

T. Teraoka, J. Ohta, T. Abe, H. Inoue, T. Ubuka

Amino Acids   5 ( 2 )   245 - 251   1993.6

ASSAY OF SIALIDASE ACTIVITY USING ION-EXCHANGE CHROMATOGRAPHY AND ACIDIC NINHYDRIN REACTION Reviewed

K YAO, T UBUKA, N MASUOKA, M KINUTA, J OHTA, T TERAOKA, S FUTANI

JOURNAL OF CHROMATOGRAPHY-BIOMEDICAL APPLICATIONS   581 ( 1 )   11 - 15   1992.10

l-Cysteine metabolism via 3-mercaptopyruvate pathway and sulfate formation in rat liver mitochondria Reviewed

T. Ubuka, J. Ohta, W. B. Yao, T. Abe, T. Teraoka, Y. Kurozumi

Amino Acids   2 ( 1-2 )   143 - 155   1992.2

CHEMICAL S-THIOLATION OF REDUCED RIBONUCLEASE-A WITH GLUTATHIONE AND CYSTEINE Reviewed

T UBUKA, J OHTA, N MASUOKA, T ABE, T TERAOKA, WB YAO, YQ CHAO

FRONTIERS AND NEW HORIZONS IN AMINO ACID RESEARCH   595 - 598   1992

S-[2-Carboxy-1-(1 H-imidazol-4-yl)ethyl]cysteine in normal human urine Reviewed

M. Kinuta, N. Masuoka, K. Yao, J. Ohta, S. Yoshida, S. Futani, T. Ubuka

Amino Acids   1 ( 2 )   259 - 262   1991.6

ISOLATION AND CHARACTERIZATION OF 3-[(CARBOXYMETHYL)THIO]-3-(1H-IMIDAZOL-4-YL)PROPANOIC ACID FROM HUMAN URINE AND PREPARATION OF ITS PROPOSED PRECURSOR, S-[2-CARBOXY-1-(1H-IMIDAZOL-4-YL)ETHYL]CYSTEINE Reviewed

M KINUTA, K YAO, N MASUOKA, J OHTA, T TERAOKA, T UBUKA

BIOCHEMICAL JOURNAL   275   617 - 621   1991.5

FORMATION OF SULFATE FROM L-CYSTEINE IN RAT-LIVER MITOCHONDRIA Reviewed

T UBUKA, S YUASA, J OHTA, N MASUOKA, K YAO, M KINUTA

ACTA MEDICA OKAYAMA   44 ( 2 )   55 - 64   1990.4

VISUALIZATION OF SIALOGLYCOPROTEINS IN POLYACRYLAMIDE GELS BY ACIDIC NINHYDRIN REACTION Reviewed

K YAO, T UBUKA, N MASUOKA, M KINUTA, J OHTA, K ISHINO

ACTA MEDICA OKAYAMA   44 ( 2 )   65 - 70   1990.4

REDUCTION OF 3-MERCAPTOPYRUVATE IN RAT-LIVER IS CATALYZED BY LACTATE-DEHYDROGENASE Reviewed

J OHTA, T UBUKA

ACTA MEDICA OKAYAMA   43 ( 2 )   89 - 95   1989.4

Toward Complete Structural Analyses of Metabolic Networks: Prototype Data Format for Describing Both Inter- and Intra-Metabolite Atom-level Connectivities

Ohta J

Proceedings for 5th International Conference on Systems Biology   141-141   2004

Data Format for Computational Analysis of Intermetabolite Atom-level Connectivity in Metabolic Networks

Ohta J

Molecular & Cellular Proteomics   2,9,830-830   2003

Utilization of protein structure information: Enumeration of protein constituent atoms satisfying complex conditions

OHTA Jun

IPSJ SIG Technical Report   2023-BIO-73 ( 23 )   1 - 1   2023.3

Metabolic fluxes giving atomic level pathways calculated by single-atom tracing

OHTA Jun

IPSJ SIG Technical Report   2022-BIO-72 ( 9 )   1 - 1   2022.11

What metabolic maps and metabolic pathway diagrams represent

OHTA Jun

IPSJ SIG Technical Report   2022-BIO-71 ( 4 )   1 - 1   2022.9

COVID-19感染者間の関係のPajekによる可視化

太田 潤

情報処理学会研究報告   2021-BIO-67 ( 5 )   1 - 1   2021.9

Single-atom tracing in a model network of carbohydrate metabolism and pathway selection

OHTA Jun

IPSJ SIG Technical Report   2018-BIO-53 ( 6 )   1 - 6   2018.3

Strategy for Exploring Metabolic Pathways: Generation of Hypothetical Metabolic Network. Reviewed

Ohta J

J Comput Sci Syst Biol   8 ( 1 )   55 - 58   2015

Attempt of stoichiometric extension of amino acid metabolism-related model metabolic network

Jun Ohta

AMINO ACIDS   37 ( 1 )   95 - 95   2009.7

IMAC, Inter- And Intra-Metabolite Atom-Level Connectivity Database

Jun Ohta

IFMBE (ISSN 1727-1983, ISBN 3-540-36839-6 Springer Berlin Heidelberg New York)   Volume 14, 4131-4131   2006

A new dipeptide, O-phosphoserylethanolamine isolated from Agkistroden blomhoffi (mamushi) Reviewed

N Masuoka, JY Zhang, L Partoo, J Ohta, K Sasaki, H Ebinuma, H Kodama

ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS   407 ( 2 )   184 - 188   2002.11

Cdk5/p35 regulates neurotransmitter release through phosphorylation and downregulation of P/Q-type voltage-dependent calcium channel activity Reviewed

K Tomizawa, J Ohta, M Matsushita, A Moriwaki, ST Li, K Takei, H Matsui

JOURNAL OF NEUROSCIENCE   22 ( 7 )   2590 - 2597   2002.4

Determination of S-[2-carboxy-1-(1H-imidazol-4-yl)ethyl]glutathione, a novel metabolite of L-histidine, in tissue extracts from sunlight-irradiated rat by capillary electrophoresis Reviewed

M Kinuta, J Ohta, H Yamada, K Kinuta, T Abe, SA Li, A Otsuka, A Nakanishi, K Takei

ELECTROPHORESIS   22 ( 16 )   3365 - 3370   2001.10

Reciprocal regulation of cysteine dioxygenase (CDO) and gamma-glutamylcysteine synthetase (gamma GCS) in rat hepatocytes.

YH Kwon, DL Bella, J Ohta, MH Stipanuk

FASEB JOURNAL   10 ( 3 )   2724 - 2724   1996.3

Atomic level pathway for glyceraldehyde 3-phosphate formation through "transaldolase variant" of Calvin-Benson cycle

OHTA Jun

2021.12.2 

Calvin-Benson回路の反応によるCO2からのリブロース1,5-ビスリン酸新規生成の原子レベル経路

太田 潤

第15回日本ゲノム微生物学会年会  2021.3.4 

Single-atom tracing in metabolic networks with symmetric metabolites

OHTA Jun

2025.3.6 

Activity ratios of atomic-level pathways calculated by single-atom tracing in a model network of carbohydrate metabolism

OHTA Jun

2024.12.4 

Activity ratios of atomic-level pathways in metabolic networks: semi-quantitative activity ratios and quantitative activity ratios

OHTA Jun

2024.3.8 

Activity ratio of metabolic pathways computed by single-atom tracing

OHTA Jun

2023.11.29 

Calculation of balance of metabolic pathways computed by single-atom tracing

OHTA Jun

2023.9.6 

タンパク質の立体構造情報の活用：複数の座標条件のそれぞれを満たすタンパク質構成原子の列挙

太田 潤

第27回オープンバイオ研究会  2023.3.11 

Utilization of protein structure information: Enumeration of protein constituent atoms satisfying complex conditions

OHTA Jun

2023.3.9 

Metabolic fluxes giving atomic level pathways calculated by single-atom tracing

OHTA Jun

2022.11.29 

Non-branched linear substructures in stoichiometric metabolic network structures of elementary flux mode type pathways

OHTA Jun

2022.3.10 

Number of symmetries of stoichiometric metabolic network structure variant of elementary flux mode type pathway

OHTA Jun

2021.11.30 

Enumerating pathways for producing ribose 5-phosphate from glucose through glycolytic reactions and non-oxidative pentose-phosphate-pathway reactions without using atomic level information

OHTA Jun

COVID-19感染者間の関係のPajekによる可視化

太田 潤

情報処理学会「第67回バイオ情報学研究会(SIGBIO)」  2021.9.30 

Stoichiometric metabolic network structure as a snapshot of the state of formation and utilization of metabolite molecules in elementary flux mode type pathway

OHTA Jun

2021.6.30 

Pajekを使う

太田 潤

第25回オープンバイオ研究会  2021.3.13 

Calculation of stoichiometric metabolic network structure of elementary flux mode type metabolic pathway: Optimization of algorithm for difference judgement between calculated network structures

OHTA Jun

2021.3.11 

Calculation of stoichiometric metabolic network structure of elementary flux mode type metabolic pathway: Acceleration of difference judgement between calculated network structures

OHTA Jun

2020.12.7 

Complexity of pathways for forming ribose 5-phosphate from glycolytic metabolites through non-oxidative pentose-phosphate-pathway reactions

OHTA Jun

2020.12.2 

Accelerating calculation of stoichiometrically balanced metabolite-level network structure of elementary flux mode type metabolic pathway

OHTA Jun

2020.9.4 

Calculation of stoichiometrically balanced metabolite-level network structure of elementary flux mode type metabolic pathway

OHTA Jun

2020.6.29 

原子レベル情報を用いる化学量論的に釣り合った生合成代謝経路算出

太田 潤

第61回日本生化学会中国・四国支部例会  2020.6.10 

生命科学系公共データベースによる実習を立案した経験

太田 潤

第24回オープンバイオ研究会  2020.3.14 

合流する生合成代謝経路の算出

太田 潤

第７０回 人工知能学会 分子生物情報研究会（SIG-MBI）  2020.3.13 

Complete atomic-level mapping of elementary flux mode-type metabolic pathways through metabolites with symmetry

OHTA Jun

2020.3.13 

化学量論的に釣り合った生合成代謝経路の原子レベルマッピング：その応用

太田 潤

第14回日本ゲノム微生物学会年会  2020.3.7 

Enumerating pathways for producing ribose 5-phosphate from glucose through glycolytic reactions and non-oxidative pentose-phosphate-pathway reactions using atomic level information

OHTA Jun

2020.9.16 

Acceleration of complete atomic-level mapping of elementary flux mode-type metabolic pathways

OHTA Jun

2019.12.2 

Atomic-level pathways for nonoxidative formation of ribose 5-phosphate by pentose phosphate pathway reactions

OHTA Jun

2019.12 

代謝ネットワークにおけるelementary flux mode型経路の完全原子レベルマッピング

太田 潤

情報処理学会「第59回バイオ情報学研究会(SIGBIO)」  2019.9.8 

Incorporation of carbon atoms of the acetyl moiety of acetyl-CoA into metabolites in an in silico model network of carbohydrate metabolism

OHTA Jun

2019.9 

Pathways for oxygen atoms of glucose to carbon dioxide in a model network of carbohydrate metabolism

SAWAE Seigo, OHTA Jun

2019.9 

Transketolase-like protein 1の代謝機能に関する13C代謝フラックス解析によるエビデンスの検討

太田 潤

第7回がんと代謝研究会  2019.8.2 

Computation of atomic-level pathways for complete biosynthesis in metabolic networks

2019.6.19 

In silico 糖質代謝モデルネットワークにおける acetyl-CoA の acetyl部分の炭素のグルコースへのグルコース非産生的取込

太田 潤

第60回日本生化学会 中国・四国支部例会  2019.5.18 

ノードの二項関係リストから所属ネットワーク別のノードリストを作成する

太田 潤

第23回オープンバイオ研究会  2019.3.10 

“原子＝人”とみてみることから垣間見える代謝ネットワークと社会的ネットワークの比喩的類似性

太田 潤

第６８回 人工知能学会 分子生物情報研究会（SIG-MBI）  2019.3.9 

Convergence of isotopomer distribution simulation in metabolic networks

OHTA Jun

2019.3.8 

メタノール利用反応を含む 糖質代謝モデルネットワークにおける メタノールからのグルコース完全合成

太田 潤

第13回日本ゲノム微生物学会年会  2019.3.6 

代謝ネットワーク：特定原料代謝産物からの目的代謝産物完全合成の可能性

太田 潤

JSBi九州地域部会セミナー@福岡市  2018.12.17 

Simulation of time course change of isotope distribution in metabolic networks

OHTA Jun

2018.12.14 

Incorporation of acetyl moiety carbons of acetyl-CoA into glucose through a model network of carbohydrate metabolism

OHTA Jun

2018.11 

EMU tracing: listing all the elementary metabolite units (EMU) which can be formed from source EMUs through a given metabolic network

OHTA Jun

2018.9.18 

Isotopomer tracing approach to investigate pathways for complete glucose synthesis from methanol through a model network of carbohydrate metabolism including reactions for methanol utilization

OHTA Jun

2018.9 

Octave/Matlab上での生化学反応のbrute force生成の試み－4本の結合が切断される場合について

大槻和平, 太田潤

第7回生命医薬情報学連合大会（IIBMP2018）  2018.9 

Isotopomer tracing: listing all the isotopomers synthesizable from source isotopomers through a given metabolic network

OHTA Jun

2018.6 

代謝ネットワークのsingle-atom tracingにより計算される経路の働きの指標について

太田 潤

JSBi九州地域部会セミナー鹿児島2018  2018.5.25 

Listing atom-level pathways in a model network of carbohydrate metabolism and calculating their stoichiometric balances

OHTA Jun

2018.5 

生物ネットワーク情報の行列表現について

太田 潤

第22回オープンバイオ研究会  2018.3.9 

新代謝経路発見のための仮想代謝ネットワーク生成について

太田 潤

第６５回 人工知能学会 分子生物情報研究会（SIG-MBI）  2018.3.8 

メタノール利用反応を含む糖質代謝モデルネットワークにおけるメタノールからグルコースへの経路の検討

太田 潤

第12回日本ゲノム微生物学会年会  2018.3 

糖質代謝モデルネットワーク上のsingle-atom tracingによる経路計算と経路選択

太田 潤

情報処理学会「第53回バイオ情報学研究会(SIGBIO)」  2018.3 

Generation of hypothetical reactions from a set of metabolites based on stoichiometry International conference

OHTA Jun

APBC 2018（The Sixteenth Asia Pacific Bioinformatics Conference）  2018.1 

Interconversion between atom mapping matrices and connectivity matrices

OHTA Jun

ConBio2017  2017.12 

代謝ネットワークのsingle-atom tracingにより計算される経路の生化学的意味について

太田 潤

日本バイオインフォマティクス学会(JSBi)九州地域部会セミナー @宮崎  2017.10 

代謝ネットワーク：原子ネットワーク構造と化学結合間のつながりによるネットワーク構造

太田 潤

JSBi 九州地域部会セミナー2017  2017.3 

Stereochemistry of the propargylglycine moiety in gamma-glutamylpropargylglycine formed from propargylglycine in baker's yeast

OHTA Jun

2016.11 

Classification of hypothetical metabolic networks

OHTA Jun

2015.12 

Atomic tracing between carbon atoms in glucose in a model network of carbohydrate metabolism

OHTA Jun

2014.11 

Toward Manipulating Biochemical Reactions on Octave/Matlab International conference

HYODO Yuki, OHTA Jun

Metabolomics 2014: The 10th International Conference of the Metabolomics Society  2014.6 

IMAC, Inter- And Intra-Metabolite Atom-Level Connectivity Database

太田 潤

第85回日本生化学会大会  2012.12 

Study on generation of hypothetical metabolic networks for prediction of uni

OHTA Jun

2010.12 

Attempt of stoichiometric extension of amino acid metabolism-related model metabolic network International conference

OHTA Jun

11th International Congress on Amino Acids, Peptides and Proteins  2009.8 

代謝ネットワークを原子ネットワークとみる考え方から“合成的”代謝ネットワーク研究へ

太田 潤

第9回日本蛋白質科学会年会  2009.5 

新代謝経路探索のための化学量論的代謝ネットワーク拡張

太田 潤

第3回日本ゲノム微生物学会年会  2009.3 

コンピュータ上での生化学反応生成から代謝ネットワーク研究へ

太田 潤

JSBi システムバイオロジー研究会  2009.1 

Manipulating Biochemical Reactions on Octave/Matlab International conference

HYODO Yuki, OHTA Jun

The 19th International Conference on Genome Informatics (GIW2008)  2008.12 

A strategy for generation of hypothetical metabolic networks based on melabolome information and stoichiometry

OHTA Jun

2008.12 

Generation of hypothetical metabolic networks for pathway prediction

OHTA Jun

2008.10 

Atom network view of metabolic networks and its potential

OHTA Jun

2008.9 

Strategy for exploring new metabolic pathways: Generation of hypothetical metabolic networks International conference

OHTA Jun

IECA2008 (International E. Coli allianace)  2008.9 

Concept of metabolic networks as atom networks and generation of metabolic networks by network expansion International conference

OHTA Jun

ICSB2008 (International Conference on Systems Biology)  2008.8 

代謝ネットワークにおけるノードの「機能」とネットワーク内での「位置」の関係に関する研究

太田 潤

第2回日本ゲノム微生物学会年会  2008.3 

Metabolic networks as atom networks and balanced reaction pattern

OHTA Jun

2007.12 

Concept of metabolic networks as atom networks International conference

OHTA Jun

Nishinomiya-Yukawa International & Interdisciplinary Symposium 2007, What is Life? Yukawa Institute for Theoretical Physics, Kyoto University  2007.10 

Visualization of atom network structure of metabolic networks by Pajek

OHTA Jun

2007.10 

A Strategy for Metabolic Pathway Prediction: Generation of Metabolic Networks Using Balanced Reaction Pattern International conference

OHTA Jun

The Seventh International Workshop on Bioinformatics and Systems Biology  2007.7 

Connectivity matrix method and atom mapping matrices International conference

OHTA Jun

Second FEBS Advanced Course on Systems Biology: From Molecules To Life  2007.3 

生物ネットワーク情報の行列表現とその代謝ネットワークへの応用

太田 潤

第1回日本ゲノム微生物学会年会  2007.3 

Visualization of Metabolic Networks as Networks of Atoms by Pajek: An Application of Connectivity Matrix Method International conference

OHTA Jun

The 17th International Conference on Genome Informatics (GIW2006)  2006.12 

Metabolic Networks: Connectivity Matrix-Based Isotopomer Analysis on Matlab/Octave International conference

OHTA Jun

The 7th International Conference on Systems Biology  2006.10 

Attempt to express topological position of individual metabolites in the whole metabolic network of Escherichia coli. International conference

OHTA Jun

IECA2006, 3rd International E.Coli Alliance Conference on Systems Biology  2006.10 

原子のネットワークとしての代謝ネットワークと社会的ネットワークの類似性について 自分が原子になったと考えてみる

太田 潤

日本ソフトウェア科学会 ネットワークが創発する知能研究会 第2回国内ワークショップ  2006.9 

Connectivity matrix method for analyses of biological networks and its application to atom-level analysis of a model network of carbohydrate metabolism International conference

OHTA Jun

12th BTK meeting, Systems Biology: Redefining Biothermokinetics, International Study Group on Systems Biology  2006.9 

ネットワークを構成するノードの「機能」とネットワーク内での「位置」の関係の研究に向けて

太田 潤

日本バイオインフォマティクス学会 システムバイオロジー研究会サテライトミーティング In 秋田  2006.8.31 

IMAC, Inter- And Intra-Metabolite Atom-Level Connectivity Database International conference

OHTA Jun

World Congress on Medical Physics and Biomedical Engineering 2006  2006.8 

Connectivity Matrix 法によるネットワーク解析 - 原子レベル代謝ネットワーク解析への応用 -

太田 潤

日本バイオインフォマティクス学会・夏の学校  2006.8 

Application of Connectivity Matrix Method to Atom-level Analysis of Metabolic Networks: Calculation of Paths Connecting Two Metabolites

OHTA Jun

CBI2006, Integration of Chem-Bio-Pharma Informatics for Rational Drug Development and e-ADMET, Chem-Bio Informatics Society  2006.7 

Atom-level and Metabolite-level Analyses of Metabolic Networks using Matlab and Octave International conference

OHTA Jun

20th IUBMB International Congress of Biochemistry and Molecular Biology and 11th FAOBMB Congress  2006.6 

化学構造を含む原子レベル代謝ネットワーク全構造の記述と解析

太田 潤

文部科学省研究費補助金・特定領域研究ゲノム「４領域」第８回ワークショップ 微生物ゲノム研究のフロンティア  2006.3 

Octave, Matlabを用いる代謝ネットワークの研究

太田 潤

日本バイオインフォマティクス学会 第９回システムバイオロジー研究会  2006.1.18 

Theoretical Analysis of Metabolic Networks: Attempt to Express Topological Position of Individual Atoms in a Given Network International conference

OHTA Jun

The 16th International Conference on Genome Informatics (GIW2005)  2005.12 

Development of "connectivity matrix" method for theoretical analyses of metabolic networks

OHTA Jun

第78回日本生化学会大会  2005.10 

数値計算ソフトOctave/Matlabを用いる原子レベルでの代謝ネットワークの研究

太田 潤

第一回 プロテイン・インフォマティクスワークショップ in 九州  2005.10 

"Connectivity Matrix" Method: Analysis of Metabolic Networks on GNU Octave/Matlab International conference

OHTA Jun

SYMBIONIC COURSE 2005: Methods, Data Handling and Standards in Neuronal Systems Biology  2005.8 

ネットワーク構造の記述法の開発

太田 潤

日本バイオインフォマティクス学会・夏の学校  2005.8 

Matlab/GNU Octave as a Platform for Analyses of Metabolic Networks

OHTA Jun

CBI学会2005年大会, Chem-Bio Informatics in the Post-Genome Era, Chem-Bio Informatics Society  2005.8 

"Connectivity matrix" method for theoretical analyses of metabolic networks International conference

OHTA Jun

Metabolomics 2005, The First Annual Meeting of the Metabolomics Society  2005.6 

Connectivity matrix for describing all the atom-level connectivities in a given metabolic network and its use for analysis of the network structure International conference

OHTA Jun

First FEBS Advanced Course on Systems Biology: From Molecules & Modeling To Cells  2005.3 

Metabolic Networks: Use of Matrix Expression for Structural Analyses

OHTA Jun

第27回日本分子生物学会年会  2004.12 

Atom-level Analysis of Metabolic Networks Consisting of Multiple Compartments

OHTA Jun

2004.10 

Toward Complete Structural Analyses of Metabolic Networks: Prototype Data Format for Describing Both Inter- and Intra-Metabolite Atom-level Connectivities International conference

OHTA Jun

5th International Conference on Systems Biology  2004.10 

Structural analyses of metabolic networks using GNU Octave

OHTA Jun

CBI学会2004年大会, New Technologies for Drug Design and Discovery in the Post-Genome Era, Chem-Bio Informatics Society  2004.7 

Atom-level Analysis of Metabolic Networks using GNU Octave and IMAC, A Database of Inter-Metabolite Atom-level Connectivity Invited International conference

OHTA Jun

IECA2004, 2nd International E.Coli Alliance Conference on Systems Biology  2004.6 

Intermetabolite atom-level connectivity in metabolic network Pathways from 6 carbon atoms of D-Glucose to CO2 in a model network of carbohydrate metabolism

OHTA Jun

2003.10 

Data Format for Computational Analysis of Intermetabolite Atom-level Connectivity in Metabolic Networks International conference

OHTA Jun

HUPO 2nd Annual & IUBMB XIX World Congress  2003.10 

A Role of Gamma-Glutamylcysteine Synthetase in Propargylglycine Metabolism International conference

OHTA Jun

HUPO 2nd Annual & IUBMB XIX World Congress  2003.10 

代謝ネットワークの構造解析：Intermetabolite atom-level connectivityを表現するformat

太田 潤

CBI2003 情報計算化学生物学会2003年大会  2003.9 

Intermetabolite atom-level connectivity in a model metabolic network of carbohydrate metabolism International conference

OHTA Jun

IECA2003, First IECA Conference on Systems Biology of E. Coli  2003.6 

ラット初代培養肝細胞によるシステイン代謝調節に関する研究

太田 潤, Young Hye Kwon, Martha, H. Stipanuk

第44回日本生化学会中国・四国支部例会  2003.5 

プロパルギルグリシン投与ラット肝臓ミトコンドリア内のγ―グルタミルプロパルギルグリシルグリシン

太田 潤

第75回日本生化学会大会  2002.10 

赤血球による過酸化水素の分解について ８．ヘモグロビンによる分解

益岡典芳, 太田潤, 汪達紘, 竹居孝二, 中野琢, 児玉裕敬

第74回日本生化学会大会  2001.10 

酵母におけるプロパルギルグリシンのγ－グルタミルプロパルギルグリシンへの代謝

太田 潤

第74回日本生化学会大会  2001.10 

Amanita pseudoporphyriaおよびAmanita abruptaに含まれる非タンパク性アミノ酸、プロパルギルグリシンの哺乳動物におけるグルタチオン類似体への代謝

太田 潤

平成13年度日本菌学会関東支部年次大会（日本大学薬学部）  2001.4.21 

Research Projects and Practicals: Biochemistry I （2024academic year） special  - その他

Lecture and Research Projects: Biochemistry I （2024academic year） special  - その他

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Biochemistry （2023academic year） special  - その他

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Lecture and Research Projects: Biochemistry I （2023academic year） special  - その他

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Lecture and Research Projects: Biochemistry II （2023academic year） special  - その他

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Project-based Learning in Molecular Pathogenesis （2021academic year） special  - その他

Biochemistry （2021academic year） special  - その他

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Practice in Biochemistry and Molecular Biology （2021academic year） special  - その他

Practice in Biochemistry （2021academic year） special  - その他

Research Projects and Practicals: Biochemistry I （2021academic year） special  - その他

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Practice in Biochemistry and Molecular Biology （2020academic year） special  - その他

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Lecture and Research Projects: Biochemistry II （2020academic year） special  - その他