MISC - Shinoda Wataru
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Elucidation of inter-leaflet coupling in asymmetric membranes induced by very long chain sphingomyelin based on solid-state NMR
KEERATISAKULSITH Tanatchphong, UMEGAWA Yuichi, TSUCHIKAWA Hiroshi, HANASHIMA Shinya, MURATA Michio, SHINODA Wataru
日本化学会春季年会講演予稿集(Web) 101st 2021
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B型肝炎ウイルス(HBV)への逆転写阻害薬剤分子の自由エネルギー計算によるカプシド内部への吸収・透過機構の解明
浦野諒, 藤本和士, 安藤嘉倫, 吉井範行, 篠田渉, 岡崎進
分子シミュレーション討論会講演要旨集 33rd 2019
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B型肝炎ウイルス(HBV)への逆転写阻害薬剤分子のカプシド内部の自由エネルギー計算
浦野諒, 藤本和士, 安藤嘉倫, 吉井範行, 篠田渉, 岡崎進
分子科学討論会講演プログラム&要旨(Web) 13th 2019
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分子動力学計算による界面活性剤含水ラメラの構造決定および分子挙動に関する研究
武田康助, 安藤嘉倫, 篠田渉, 岡崎進, 岡崎進
分子シミュレーション討論会講演要旨集 33rd 2019
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Structure Elucidation of Ion Channel Assembly Formed by Amphotericin B and Sterol
山本智也, 山本智也, 梅川雄一, 梅川雄一, 中川泰男, 鈴木大河, 山上正輝, 土川博史, 花島慎弥, 村田道雄, 村田道雄, 松森信明, 松森信明, SEO Sangjae, 篠田渉
天然有機化合物討論会講演要旨集(Web) 60th 2018
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pgRNAを内包したB型肝炎ウイルスの全原子分子動力学シミュレーション
山口陽平, 今井甫, 藤本和士, 浦野諒, 篠田渉, 尾曲克己, 田中靖人, 石川哲也, 中川敦史, 岡崎進
分子シミュレーション討論会講演要旨集 31st 2017
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分子動力学法による界面活性剤水和結晶の融解挙動に関する研究
武田康助, 武田康助, 田渕友季子, 安藤嘉倫, 篠田渉, 岡崎進, 岡崎進
分子シミュレーション討論会講演要旨集 31st 2017
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分子動力学法を用いた生体膜の水透過における自由エネルギーの解析
山崎隼也, 伊藤太一, 安藤嘉倫, 篠田渉, 岡崎進
分子シミュレーション討論会講演要旨集 29th 2015
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全原子分子動力学計算によるポリオウイルスカプシドの溶液内安定性についての研究
安藤嘉倫, 吉井範行, 山田篤志, 藤本和士, 小嶋秀和, 水谷圭佑, 中川敦史, 野本明男, 篠田渉, 岡崎進
日本膜学会年会講演要旨集 37th 2015
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分子動力学法を用いた生体膜の水透過における自由エネルギーの解析
山崎隼也, 伊藤太一, 安藤嘉倫, 篠田渉, 岡崎進
分子科学討論会講演プログラム&要旨(Web) 9th 2015
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脂質膜間距離による膜の物性変化
井上未知子, 安藤嘉倫, 篠田渉, 岡崎進, 岡崎進
分子シミュレーション討論会講演要旨集 29th 2015
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Lipid bilayer energetics, deformations, and interaction with carbon nanoparticles studied by molecular dynamics simulations
Steven O. Nielsen, Wataru Shinoda
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 247 2014.3
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スフィンゴ脂質膜の構造とダイナミクス-コレステロール含有による変化-
永山日菜, 安藤嘉倫, 篠田渉, 岡崎進
分子シミュレーション討論会講演要旨集 28th 2014
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スフィンゴミエリン/コレステロール/DOPC3成分膜のLo,Ld相の分子動力学計算
柴山総一郎, 篠田渉, 安藤嘉倫, 岡崎進
分子シミュレーション討論会講演要旨集 28th 2014
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Coarse-grained molecular dynamics of PEGylated assemblies
Sharon M. Loverde, Wataru Shinoda, Dennis E. Discher, Michael L. Klein
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 245 2013.4
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26pBJ-8 Analysis of physical properties of liposome aiming at bridging the molecular theory to continuous elastic theory II
Nakamura Takenobu, Shinoda Wataru
Meeting abstracts of the Physical Society of Japan 67 ( 1 ) 416 - 416 2012.3
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22pJF-2 The evaluation of material properties of liposome From Molecular description to continuous description
Nakamura Takenobu, Shinoda Wataru
Meeting abstracts of the Physical Society of Japan 66 ( 2 ) 319 - 319 2011.8
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24aPS-18 The choice of contours to calculate the local pressure for the spherical coordinate
Nakamura Takenobu, Shinoda Wataru
Meeting abstracts of the Physical Society of Japan 66 ( 2 ) 342 - 342 2011.8
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21pJF-11 Novel numerical method to calculate the local pressure tensor in the spherical coordinates for Molecular systems
Nakamura Takenobu, Shinoda Wataru
Meeting abstracts of the Physical Society of Japan 66 ( 2 ) 309 - 309 2011.8
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23aGN-11 The O(N) first-principles calculations on a large system of gramicidin-A II
Arita M., Miyazaki T., Todorovic M., Shinoda W., Bowler D. R.
Meeting abstracts of the Physical Society of Japan 66 ( 2 ) 325 - 325 2011.8
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28aGV-12 The implementation of the calculation method of pressure profile for the spherically symmetric systems and material property of liposome
Nakamura Takenobu, Shinoda Wataru
Meeting abstracts of the Physical Society of Japan 66 ( 1 ) 417 - 417 2011.3
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28aGV-3 The O(N) first-principles calculations on a large system of gramicidin-A
Arita M., Miyazaki T., Todorovic M., Shinoda W., Bowler D. R.
Meeting abstracts of the Physical Society of Japan 66 ( 1 ) 416 - 416 2011.3
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Advantages of using implicit solid models in the study of nano-scaled interfaces
Udayana Ranatunga, Chi-Cheng Chiu, Preston B. Moore, Wataru Shinoda, Steven Nielsen
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 241 2011.3
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Simulating nanoparticles and surfactant in the vicinity of oil/water interfaces
Udayana Ranatunga, Chuong T. Nguyen, Blake A. Wilson, Wataru Shinoda, Steven O. Nielsen
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 241 2011.3
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Influence of solvation and interparticle interactions on the aggregation behavior of nanoparticles in membranes
Udayana Ranatunga, Arben Jusufi, Russell H. DeVane, Wataru Shinoda, Michael L. Klein, Steven O. Nielsen
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 241 2011.3
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Aggregation behavior of nanoparticles constrained at oil/water interfaces
Udayana Ranatunga, Wataru Shinoda, Steven Nielsen
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 241 2011.3
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Development of a Coarse-Grained Model for the Surfactant Family of Linear Alkylbenzene Sulfonates
Xibing He, Wataru Shinoda, Russell Devane, Olgun Guvench, Kelly L. Anderson, Alexander D. MacKerell, Michael L. Klein
BIOPHYSICAL JOURNAL 100 ( 3 ) 147 - 147 2011.2
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Graphical processing unit acceleration of coarse grained molecular dynamics and data analysis
David N. LeBard, Benjamin G. Levine, Russell DeVane, Wataru Shinoda, John E. Stone, Axel Kohlmeyer, Klein L. Michael
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 240 2010.8
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Coarse grained molecular dynamics of biological and soft matter systems
Russell H. DeVane, Wataru Shinoda, Michael L. Klein
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 240 2010.8
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Effect of spherical fullerenes on pulmonary lipid monolayers: Molecular dynamics simulations
Steven O. Nielsen, Chi-cheng Chiu, Preston B. Moore, Russell DeVane, Michael L. Klein, Wataru Shinoda
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 240 2010.8
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20pEC-4 Molecular Dynamics of Vesicles : Coarse-grained molecular modeling on the basis of all-atomic simulation
Shinoda Wataru
Meeting abstracts of the Physical Society of Japan 65 ( 1 ) 368 - 368 2010.3
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20aEF-11 Elastic moduli of vesicles from particle simulations (II)
Nakamura Takenobu, Shinoda Wataru, Mikami Masuhiro
Meeting abstracts of the Physical Society of Japan 65 ( 1 ) 366 - 366 2010.3
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Mean field approach for computing solid-liquid surface tension for nanoscale interfaces
Steven O. Nielsen, Chi-cheng Chiu, Udayana Ranatunga, Preston B. Moore, Wataru Shinoda
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 239 2010.3
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COLL 458-Area per ligand as a function of nanoparticle radius: A theoretical and computer simulation approach
Robert J. B. Kalescky, Wataru Shinoda, Preston Moore, Steven O. Nielsen
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 238 2009.8
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合成脂質膜の分子シミュレーション - フッ素化脂質 Invited
齋藤大明, 篠田渉
分子シミュレーション研究会会誌 アンサンブル 11 ( 4 ) 22 - 25 2009.4
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COMP 2-Coarse grain models for molecular dynamics simulation
Russell DeVane, Wataru Shinoda, Michael L. Klein
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 236 2008.8
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PHYS 116-Calculation of the surface tension between water and a flat solid
Uriel Vazquez, Chi-cheng Chiu, Wataru Shinoda, D. Vladimir Perez, Preston B. Moore, Steven O. Nielsen
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 236 2008.8
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COLL 43-Nanoparticle localization energy at the oil/water interface: Effect of the deformable organic ligand coating
Udayana Ranathunga Jayasekara, Robert J. B. Kalescky, Chi-cheng Chiu, Wataru Shinoda, Preston B. Moore, Steven O. Nielsen
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 236 2008.8
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PHYS 324-Measurement of the contact angle of a water droplet on a flat surface
Uriel Vazquez, Chi-cheng Chiu, Wataru Shinoda, D. Vladimir Perez, Preston B. Moore, Steven O. Nielsen
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 236 2008.8
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COLL 378-Correlating surfactant hydrophilic-lipophilic balance and nanoparticle radii via coarse-grained molecular dynamics simulations
Robert J. B. Kaleseky, Wataru Shinoda, Preston B. Moore, Steven O. Nielsen
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 235 2008.4
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COLL 372-Theory of nanoparticle self-assembly at oil/water interfaces: The role of curvature
Steven O. Nielsen, Preston B. Moore, Wataru Shinoda, Robert J. B. Kalescky, Chi-cheng Chiu
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 235 2008.4
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23pTG-4 Electronic band structure of polyicosahedral Si nanowire
Nishio K., Ozaki T., Morishita T., Shinoda W., Mikami M.
Meeting abstracts of the Physical Society of Japan 63 ( 1 ) 804 - 804 2008.2
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22aRL-1 The shear hysteresis in the lamellar phase by dissipative particle dynamics
Nakamura Takenobu, Shinoda Wataru, Mikami Masuhiro
Meeting abstracts of the Physical Society of Japan 62 ( 2 ) 366 - 366 2007.8
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COLL 26-Coarse-grained molecular simulation of surfactant self-assembly
Wataru Shinoda, Michael L. Klein
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 234 2007.8
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COMP 384-Multiproperty parametrization of a coarse grained model for proteins
Russell DeVane, Wataru Shinoda, Michael L. Klein
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 234 2007.8
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COMP 258-Multi-terascale molecular modeling of biological systems
Russell DeVane, Wataru Shinoda, Jerome Henin, Matteo Dal Peraro, Axel Kohlmeyer, Michael L. Klein
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 234 2007.8
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21aTG-5 Molecular dynamics simulation of polyicosahedral Si nanowire formation
Nishio K., Morishita T., Shinoda W., Mikami M.
Meeting abstracts of the Physical Society of Japan 62 ( 1 ) 919 - 919 2007.2
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ナノとバイオ領域における膜科学 高度含フッ素リン脂質液晶膜の創製と特性化
馬場照彦, 高井克毅, 高木俊之, 金森敏幸, 篠田渉, 齋藤大明, 三上益弘
膜シンポジウム ( 18 ) 41 - 44 2006.10
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Molecular dynamics simulations of self-organized polyicosahedral Si nanowire
Kengo Nishio, Tetsuya Morishita, Wataru Shinoda, Masuhiro Mikami
JOURNAL OF CHEMICAL PHYSICS 125 ( 7 ) 074712-1-074712-4 2006.8
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28aXJ-5 Molecular dynamics simulation of the icosahedral Si nano cluster formation
Nishio K., Morishita T., Shinoda W., Mikami M.
Meeting abstracts of the Physical Society of Japan 61 ( 1 ) 877 - 877 2006.3
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28pPSB-39 Calculation of free energy of a water molecule in a lipid bilayer using overlapping method
Shinoda Keiko, Shinoda Wataru, Mikami Masuhiro
Meeting abstracts of the Physical Society of Japan 61 ( 1 ) 370 - 370 2006.3
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Molecular dynamics simulation of icosahedral Si quantum dot formation from liquid droplets
K Nishio, T Morishita, W Shinoda, M Mikami
PHYSICAL REVIEW B 72 ( 24 ) 245321-1-4 2005.12
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Intermolecular interaction between the pendant chain of perfluorinated ionomer and methanol
S Urata, J Irisawa, A Takada, S Tsuzuki, W Shinoda, M Mikami
JOURNAL OF FLUORINE CHEMISTRY 126 ( 9-10 ) 1312 - 1320 2005.10
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Molecular dynamics study of the methanol effect on the membrane morphology of perfluorosulfonic ionomers
S Urata, J Irisawa, A Takada, W Shinoda, S Tsuzuki, M Mikami
JOURNAL OF PHYSICAL CHEMISTRY B 109 ( 36 ) 17274 - 17280 2005.9
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24aYW-5 Molecular Dynamics study on the freezing phenomena of Ar confined in nanopores
Nishio K., Shinoda W., Morishita T., Mikami M.
Meeting abstracts of the Physical Society of Japan 60 ( 1 ) 347 - 347 2005.3
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Molecular dynamics simulation of swollen membrane of perfluorinated ionomer
S Urata, J Irisawa, A Takada, W Shinoda, S Tsuzuki, M Mikami
JOURNAL OF PHYSICAL CHEMISTRY B 109 ( 9 ) 4269 - 4278 2005.3
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15aTA-13 Molecular dynamics simulation of an ether-linked lipid bilayer
Shinoda Keiko, Shinoda Wataru, Mikami Masuhiro
Meeting abstracts of the Physical Society of Japan 59 ( 2 ) 311 - 311 2004.8
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Intermolecular interaction between the pendant chain of perfluorinated ionomer and water
S Urata, J Irisawa, A Takada, S Tsuzuki, W Shinoda, M Mikami
PHYSICAL CHEMISTRY CHEMICAL PHYSICS 6 ( 13 ) 3325 - 3332 2004.7
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水の比熱:経路積分分子動力学法による研究
篠田渉, 志賀基之
分子シミュレーション討論会講演要旨集 18th 2004
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経路積分分子動力学法による比熱の精密計算
志賀基之, 篠田渉
分子構造総合討論会講演要旨集(CD-ROM) 2004 2004
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温度と応力を制御した分子動力学法による粒界すべりの研究
志賀基之, 篠田渉
分子シミュレーション討論会講演要旨集 18th 2004
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Rigid-body dynamics in the isothermal-isobaric ensemble: A test on the accuracy and computational efficiency
W Shinoda, M Mikami
JOURNAL OF COMPUTATIONAL CHEMISTRY 24 ( 8 ) 920 - 930 2003.6
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分子動力学法による温度とストレスの制御とその応用
志賀基之, 篠田渉, 三上益弘, 蕪木英雄
分子構造総合討論会講演要旨集(CD-ROM) 2003 2003
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Development of General Purpose Molecular Dynamics Simulation System TACPACK 2000 III - Systematization technologies -
Minami Kazuyoshi, Morikawa Yoshitada, Ogawa Hiroshi, Tanaka Shingo, Terakura Kiyoyuki, Masuda Hirotoshi, Mitsui Takashi, Sasaki Mikio, Mikami Masuhiro, Shinoda Wataru, Liew Chie Chin, Kawata Masaaki, Ikeshoji Tamio
Symposium on Chemical Information and Computer Sciences 0 ( 0 ) J25 - J25 2001
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篠田 渉, 岡崎 進
電気化学および工業物理化学 : denki kagaku 68 ( 2 ) 129 - 133 2000.2