Updated on 2024/12/21

写真a

 
髙見 常明
 
Organization
Department of Comprehensive Technical Solutions Technical Expert staff
Position
Technical Expert staff
External link

Research Interests

  • Chloroplast

  • Photosyntesis

  • Organelle DNA

Professional Memberships

  • THE JAPANESE SOCIETY OF PLANT PHYSIOLOGISTS

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Papers

  • Characterization of organelle DNA degradation mediated by DPD1 exonuclease in the rice genome-edited line

    Md. Faridul Islam, Hiroshi Yamatani, Tsuneaki Takami, Makoto Kusaba, Wataru Sakamoto

    Plant Molecular Biology   114 ( 3 )   2024.6

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    Publishing type:Research paper (scientific journal)   Publisher:Springer Science and Business Media LLC  

    Abstract

    Mitochondria and plastids, originated as ancestral endosymbiotic bacteria, contain their own DNA sequences. These organelle DNAs (orgDNAs) are, despite the limited genetic information they contain, an indispensable part of the genetic systems but exist as multiple copies, making up a substantial amount of total cellular DNA. Given this abundance, orgDNA is known to undergo tissue-specific degradation in plants. Previous studies have shown that the exonuclease DPD1, conserved among seed plants, degrades orgDNAs during pollen maturation and leaf senescence in Arabidopsis. However, tissue-specific orgDNA degradation was shown to differ among species. To extend our knowledge, we characterized DPD1 in rice in this study. We created a genome-edited (GE) mutant in which OsDPD1 and OsDPD1-like were inactivated. Characterization of this GE plant demonstrated that DPD1 was involved in pollen orgDNA degradation, whereas it had no significant effect on orgDNA degradation during leaf senescence. Comparison of transcriptomes from wild-type and GE plants with different phosphate supply levels indicated that orgDNA had little impact on the phosphate starvation response, but instead had a global impact in plant growth. In fact, the GE plant showed lower fitness with reduced grain filling rate and grain weight in natural light conditions. Taken together, the presented data reinforce the important physiological roles of orgDNA degradation mediated by DPD1.

    DOI: 10.1007/s11103-024-01452-x

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    Other Link: https://link.springer.com/article/10.1007/s11103-024-01452-x/fulltext.html

  • Plastid inheritance revisited: emerging role of organelle DNA degradation in angiosperms.

    Wataru Sakamoto, Tsuneaki Takami

    Plant & cell physiology   2023.9

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    Plastids are essential organelles in angiosperms and show non-Mendelian inheritance due to their evolution as endosymbionts. In approximately 80% of angiosperms, plastids are thought to be inherited from the maternal parent, whereas other species transmit plastids biparentally. Maternal inheritance can be generally explained by the stochastic segregation of maternal plastids after fertilization because the zygote is overwhelmed by the maternal cytoplasm. In contrast, biparental inheritance shows transmission of organelles from both parents. In some species, maternal inheritance is not absolute and paternal leakage occurs at a very low frequency (~10-5). A key process controlling the inheritance mode lies in the behavior of plastids during male gametophyte (pollen) development, with accumulating evidence indicating that the plastids themselves or their DNAs are eliminated during pollen maturation or at fertilization. Cytological observations in numerous angiosperm species have revealed several critical steps that mutually influence the degree of plastid transmission quantitatively among different species. This review revisits plastid inheritance and focuses on the mechanistic viewpoint. Particularly, we focus on a recent finding demonstrating that both low temperature and plastid DNA degradation mediated by the organelle exonuclease DPD1 influence the degree of paternal leakage significantly in tobacco. Given these findings, we also highlight the emerging role of DPD1 in organelle DNA degradation.

    DOI: 10.1093/pcp/pcad104

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  • Maternal plastid inheritance: two abating factors identified. International journal

    Wataru Sakamoto, Tsuneaki Takami

    Trends in genetics : TIG   39 ( 5 )   342 - 343   2023.5

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    Language:English   Publishing type:Research paper (scientific journal)  

    Organelle DNAs (orgDNAs) in mitochondria and plastids are generally inherited from the maternal parent; however, it is unclear how their inheritance mode is controlled, particularly in the plastids of seed plants. Chung et al. identify two factors that affect maternal inheritance in tobacco plastids: cold temperature and DNA amount in pollen.

    DOI: 10.1016/j.tig.2023.03.002

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  • Sorghum Ionomics Reveals the Functional SbHMA3a Allele that Limits Excess Cadmium Accumulation in Grains.

    Fiona Wacera Wahinya, Kiyoshi Yamazaki, Zihuan Jing, Tsuneaki Takami, Takehiro Kamiya, Hiromi Kajiya-Kanegae, Hideki Takanashi, Hiroyoshi Iwata, Nobuhiro Tsutsumi, Toru Fujiwara, Wataru Sakamoto

    Plant & cell physiology   63 ( 5 )   713 - 728   2022.5

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    Understanding uptake and redistribution of essential minerals or sequestering of toxic elements is important for optimized crop production. Although the mechanisms controlling mineral transport have been elucidated in rice and other species, little is understood in sorghum-an important C4 cereal crop. Here, we assessed the genetic factors that govern grain ionome profiles in sorghum using recombinant inbred lines (RILs) derived from a cross between BTx623 and NOG (Takakibi). Pairwise correlation and clustering analysis of 22 elements, measured in sorghum grains harvested under greenhouse conditions, indicated that the parental lines, as well as the RILs, show different ionomes. In particular, BTx623 accumulated significantly higher levels of cadmium (Cd) than NOG, because of differential root-to-shoot translocation factors between the two lines. Quantitative trait locus (QTL) analysis revealed a prominent QTL for grain Cd concentration on chromosome 2. Detailed analysis identified SbHMA3a, encoding a P1B-type ATPase heavy metal transporter, as responsible for low Cd accumulation in grains; the NOG allele encoded a functional HMA3 transporter (SbHMA3a-NOG) whose Cd-transporting activity was confirmed by heterologous expression in yeast. BTx623 possessed a truncated, loss-of-function SbHMA3a allele. The functionality of SbHMA3a in NOG was confirmed by Cd concentrations of F2 grains derived from the reciprocal cross, in which the NOG allele behaved in a dominant manner. We concluded that SbHMA3a-NOG is a Cd transporter that sequesters excess Cd in root tissues, as shown in other HMA3s. Our findings will facilitate the isolation of breeding cultivars with low Cd in grains or in exploiting high-Cd cultivars for phytoremediation.

    DOI: 10.1093/pcp/pcac035

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  • NB-LRR-encoding genes conferring susceptibility to organophosphate pesticides in sorghum

    Zihuan Jing, Fiona Wacera W., Tsuneaki Takami, Hideki Takanashi, Fumi Fukada, Yoji Kawano, Hiromi Kajiya-Kanegae, Hiroyoshi Iwata, Nobuhiro Tsutsumi, Wataru Sakamoto

    Scientific Reports   11 ( 1 )   2021.12

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    Publishing type:Research paper (scientific journal)   Publisher:Springer Science and Business Media LLC  

    <title>Abstract</title>Organophosphate is the commonly used pesticide to control pest outbreak, such as those by aphids in many crops. Despite its wide use, however, necrotic lesion and/or cell death following the application of organophosphate pesticides has been reported to occur in several species. To understand this phenomenon, called organophosphate pesticide sensitivity (OPS) in sorghum, we conducted QTL analysis in a recombinant inbred line derived from the Japanese cultivar NOG, which exhibits OPS. Mapping OPS in this population identified a prominent QTL on chromosome 5, which corresponded to <italic>Organophosphate-Sensitive Reaction</italic> (<italic>OSR</italic>) reported previously in other mapping populations. The <italic>OSR</italic> locus included a cluster of three genes potentially encoding nucleotide-binding leucine-rich repeat (NB-LRR, NLR) proteins, among which <italic>NLR-C</italic> was considered to be responsible for OPS in a dominant fashion. <italic>NLR-C</italic> was functional in NOG, whereas the other resistant parent, BTx623, had a null mutation caused by the deletion of promoter sequences. Our finding of <italic>OSR</italic> as a dominant trait is important not only in understanding the diversified role of NB-LRR proteins in cereals but also in securing sorghum breeding free from OPS.

    DOI: 10.1038/s41598-021-98908-7

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    Other Link: https://www.nature.com/articles/s41598-021-98908-7

  • Mutations in a Golden2-Like Gene Cause Reduced Seed Weight in Barley albino lemma 1 Mutants.

    Shin Taketa, Momoko Hattori, Tsuneaki Takami, Eiko Himi, Wataru Sakamoto

    Plant & cell physiology   62 ( 3 )   447 - 457   2021.7

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    The albino lemma 1 (alm1) mutants of barley (Hordeum vulgare L.) exhibit obvious chlorophyll-deficient hulls. Hulls are seed-enclosing tissues on the spike, consisting of the lemma and palea. The alm1 phenotype is also expressed in the pericarp, culm nodes and basal leaf sheaths, but leaf blades and awns are normal green. A single recessive nuclear gene controls tissue-specific alm1 phenotypic expression. Positional cloning revealed that the ALM1 gene encodes a Golden 2-like (GLK) transcription factor, HvGLK2, belonging to the GARP subfamily of Myb transcription factors. This finding was validated by genetic evidence indicating that all 10 alm1 mutants studied had a lesion in functionally important regions of HvGLK2, including the three alpha-helix domains, an AREAEAA motif and the GCT box. Transmission electron microscopy revealed that, in lemmas of the alm1.g mutant, the chloroplasts lacked thylakoid membranes, instead of stacked thylakoid grana in wild-type chloroplasts. Compared with wild type, alm1.g plants showed similar levels of leaf photosynthesis but reduced spike photosynthesis by 34%. The alm1.g mutant and the alm1.a mutant showed a reduction in 100-grain weight by 15.8% and 23.1%, respectively. As in other plants, barley has HvGLK2 and a paralog, HvGLK1. In flag leaves and awns, HvGLK2 and HvGLK1 are expressed at moderate levels, but in hulls, HvGLK1 expression was barely detectable compared with HvGLK2. Barley alm1/Hvglk2 mutants exhibit more severe phenotypes than glk2 mutants of other plant species reported to date. The severe alm1 phenotypic expression in multiple tissues indicates that HvGLK2 plays some roles that are nonredundant with HvGLK1.

    DOI: 10.1093/pcp/pcab001

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  • Overexpression of BUNDLE SHEATH DEFECTIVE 2 improves the efficiency of photosynthesis and growth in Arabidopsis. Reviewed International journal

    Florian A Busch, Jun Tominaga, Masato Muroya, Norihiko Shirakami, Shunichi Takahashi, Wataru Yamori, Takuya Kitaoka, Sara E Milward, Kohji Nishimura, Erika Matsunami, Yosuke Toda, Chikako Higuchi, Atsuko Muranaka, Tsuneaki Takami, Shunsuke Watanabe, Toshinori Kinoshita, Wataru Sakamoto, Atsushi Sakamoto, Hiroshi Shimada

    The Plant journal : for cell and molecular biology   102 ( 1 )   129 - 137   2020.4

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    Bundle Sheath Defective 2, BSD2, is a stroma-targeted protein initially identified as a factor required for the biogenesis of ribulose 1,5-bisphosphate carboxylase/oxygenase (RuBisCO) in maize. Plants and algae universally have a homologous gene for BSD2 and its deficiency causes a RuBisCO-less phenotype. As RuBisCO can be the rate-limiting step in CO2 assimilation, the overexpression of BSD2 might improve photosynthesis and productivity through the accumulation of RuBisCO. To examine this hypothesis, we produced BSD2 overexpression lines in Arabidopsis. Compared with wild type, the BSD2 overexpression lines BSD2ox-2 and BSD2ox-3 expressed 4.8-fold and 8.8-fold higher BSD2 mRNA, respectively, whereas the empty-vector (EV) harbouring plants had a comparable expression level. The overexpression lines showed a significantly higher CO2 assimilation rate per available CO2 and productivity than EV plants. The maximum carboxylation rate per total catalytic site was accelerated in the overexpression lines, while the number of total catalytic sites and RuBisCO content were unaffected. We then isolated recombinant BSD2 (rBSD2) from E. coli and found that rBSD2 reduces disulfide bonds using reductants present in vivo, for example glutathione, and that rBSD2 has the ability to reactivate RuBisCO that has been inactivated by oxidants. Furthermore, 15% of RuBisCO freshly isolated from leaves of EV was oxidatively inactivated, as compared with 0% in BSD2-overexpression lines, suggesting that the overexpression of BSD2 maintains RuBisCO to be in the reduced active form in vivo. Our results demonstrated that the overexpression of BSD2 improves photosynthetic efficiency in Arabidopsis and we conclude that it is involved in mediating RuBisCO activation.

    DOI: 10.1111/tpj.14617

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  • Organelle DNA degradation contributes to the efficient use of phosphate in seed plants Reviewed International journal

    Takami Tsuneaki, Ohnishi Norikazu, Kurita Yuko, Iwamura Shoko, Ohnishi Miwa, Kusaba Makoto, Mimura Tetsuro, Sakamoto Wataru

    NATURE PLANTS   4 ( 12 )   1044 - 1055   2018.12

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    Mitochondria and chloroplasts (plastids) both harbour extranuclear DNA that originates from the ancestral endosymbiotic bacteria. These organelle DNAs (orgDNAs) encode limited genetic information but are highly abundant, with multiple copies in vegetative tissues, such as mature leaves. Abundant orgDNA constitutes a substantial pool of organic phosphate along with RNA in chloroplasts, which could potentially contribute to phosphate recycling when it is degraded and relocated. However, whether orgDNA is degraded nucleolytically in leaves remains unclear. In this study, we revealed the prevailing mechanism in which organelle exonuclease DPD1 degrades abundant orgDNA during leaf senescence. The DPD1 degradation system is conserved in seed plants and, more remarkably, we found that it was correlated with the efficient use of phosphate when plants were exposed to nutrient-deficient conditions. The loss of DPD1 compromised both the relocation of phosphorus to upper tissues and the response to phosphate starvation, resulting in reduced plant fitness. Our findings highlighted that DNA is also an internal phosphate-rich reservoir retained in organelles since their endosymbiotic origin.

    DOI: 10.1038/s41477-018-0291-x

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  • Chloroplast DNA dynamics: Copy number, quality control and degradation Reviewed

    Wataru Sakamoto, Tsuneaki Takami

    Plant and Cell Physiology   59 ( 6 )   1120 - 1127   2018.6

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    Language:English   Publisher:Oxford University Press  

    Endosymbiotically originated chloroplast DNA (cpDNA) encodes part of the genetic information needed to fulfill chloroplast function, including fundamental processes such as photosynthesis. In the last two decades, advances in genome analysis led to the identification of a considerable number of cpDNA sequences from various species. While these data provided the consensus features of cpDNA organization and chloroplast evolution in plants, how cpDNA is maintained through development and is inherited remains to be fully understood. In particular, the fact that cpDNA exists as multiple copies despite its limited genetic capacity raises the important question of how copy number is maintained or whether cpDNA is subjected to quantitative fluctuation or even developmental degradation. For example, cpDNA is abundant in leaves, where it forms punctate structures called nucleoids, which seemingly alter their morphologies and numbers depending on the developmental status of the chloroplast. In this review, we summarize our current understanding of 'cpDNA dynamics', focusing on the changes in DNA abundance. A special focus is given to the cpDNA degradation mechanism, which appears to be mediated by Defective in Pollen organelle DNA degradation 1 (DPD1), a recently discovered organelle exonuclease. The physiological significance of cpDNA degradation in flowering plants is also discussed.

    DOI: 10.1093/pcp/pcy084

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  • Overexpression of the protein disulfide isomerase AtCYO1 in chloroplasts slows dark-induced senescence in Arabidopsis Reviewed

    Jun Tominaga, Yasutoshi Nakahara, Daisuke Horikawa, Ayumi Tanaka, Maki Kondo, Yasuhiro Kamei, Tsuneaki Takami, Wataru Sakamoto, Kazutoshi Unno, Atsushi Sakamoto, Hiroshi Shimada

    BMC Plant Biology   18 ( 1 )   2018.5

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    Language:English   Publishing type:Research paper (scientific journal)   Publisher:BioMed Central Ltd.  

    Background: Chlorophyll breakdown is the most obvious sign of leaf senescence. The chlorophyll catabolism pathway and the associated proteins/genes have been identified in considerable detail by genetic approaches combined with stay-green phenotyping. Arabidopsis CYO1 (AtCYO1), a protein disulfide reductase/isomerase localized in the thylakoid membrane, is hypothesized to assemble the photosystem by interacting with cysteine residues of the subunits. Results: In this study, we report that ectopic overexpression of AtCYO1 in leaves induces a stay-green phenotype during darkness, where oxidative conditions favor catabolism. In AtCYO1ox leaves, Fv/Fm and both chlorophyll a and chlorophyll b content remained high during dark-induced senescence. The thylakoid ultrastructure was preserved for a longer time in AtCYO1ox leaves than in wild type leaves. AtCYO1ox leaves maintained thylakoid chlorophyll-binding proteins associated with both PSII (D1, D2, CP43, CP47, LHCB2, and Cyt f) and PSI (PSA-A/B), as well as stromal proteins (Rubisco and ferredoxin-NADP+ reductase). AtCYO1ox did not affect senescence-inducible gene expression for chlorophyll catabolism or accumulation of chlorophyll catabolites. Conclusions: Our results suggest that ectopic overexpression of AtCYO1 had a negative impact on the initiation of chlorophyll degradation and proteolysis within chloroplasts. Our findings cast new light on the redox regulation of protein disulfide bonds for the maintenance of functional chloroplasts.

    DOI: 10.1186/s12870-018-1294-5

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  • Impairment of Lhca4, a subunit of LHCI, causes high accumulation of chlorophyll and the stay-green phenotype in rice Reviewed

    Hiroshi Yamatani, Kaori Kohzuma, Michiharu Nakano, Tsuneaki Takami, Yusuke Kato, Yoriko Hayashi, Yuki Monden, Yutaka Okumoto, Tomoko Abe, Toshihiro Kumamaru, Ayumi Tanaka, Wataru Sakamoto, Makoto Kusaba

    Journal of Experimental Botany   69 ( 5 )   1027 - 1035   2018.2

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    Language:English   Publishing type:Research paper (scientific journal)   Publisher:Oxford University Press  

    Chlorophyll is an essential molecule for acquiring light energy during photosynthesis. Mutations that result in chlorophyll retention during leaf senescence are called - € stay-green' mutants. One of the several types of stay-green mutants, Type E, accumulates high levels of chlorophyll in the pre-senescent leaves, resulting in delayed yellowing. We isolated delayed yellowing1-1 (dye1-1), a rice mutant whose yellowing is delayed in the field. dye1-1 accumulated more chlorophyll than the wild-type in the pre-senescent and senescent leaves, but did not retain leaf functionality in the - €- senescent green leaves', suggesting that dye1-1 is a Type E stay-green mutant. Positional cloning revealed that DYE1 encodes Lhca4, a subunit of the light-harvesting complex I (LHCI). In dye1-1, amino acid substitution occurs at the location of a highly conserved amino acid residue involved in pigment binding
    indeed, a severely impaired structure of the PSI-LHCI super-complex in dye1-1 was observed in a blue native PAGE analysis. Nevertheless, the biomass and carbon assimilation rate of dye1-1 were comparable to those in the wild-type. Interestingly, Lhcb1, a trimeric LHCII protein, was highly accumulated in dye1-1, in the chlorophyll-protein complexes. The high accumulation of LHCII in the LHCI mutant dye1 suggests a novel functional interaction between LHCI and LHCII.

    DOI: 10.1093/jxb/erx468

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  • Rice CYO1, an ortholog of Arabidopsis thaliana cotyledon chloroplastbiogenesis factor AtCYO1, is expressed in leaves and involved in photosynthetic performance Reviewed

    Jun Tominaga, Haruka Mizutani, Daisuke Horikawa, Yasutoshi Nakahara, Tsuneaki Takami, Wataru Sakamoto, Atsushi Sakamoto, Hiroshi Shimada

    JOURNAL OF PLANT PHYSIOLOGY   207   78 - 83   2016.12

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    Language:English   Publishing type:Research paper (scientific journal)   Publisher:ELSEVIER GMBH, URBAN & FISCHER VERLAG  

    In the dicotyledonous plant Arabidopsis thaliana, the cotyledon chloroplast biogenesis factor AtCYO1 is crucial for the biogenesis of cotyledon chloroplasts. Arabidopsis mutants lacking AtCYO1 have pale cotyledons but develop normal mature leaves. In the monocotyledonous plant Oryza sativa, the gene OsCYO1 has high sequence identity to AtCYO1, but its function is unknown. We examined the role of OsCYO1 in O. sativa. We first confirmed that transformation with OsCYO1 could recover the phenotype of the Arabidopsis cyo1 mutant. Similar to AtCYO1, recombinant OsCYO1 has protein disulfide reductase (PDR) activity, which increased as a function of dieosin glutathione disulfide concentration with an apparent K-m of 3.2 mu M and K-cat of 0.53 min(-1). The PDR activity was reduced when NADPH or NADH was used as an electron donor; however, PDR activity was observed with OsCYO1 and glutathione, suggesting that glutathione may serve as a reducing agent for OsCYO1 in vivo. In O. sativa, the OsCYO1 transcript level was higher in leaves compared with the coleoptile, which is the first leaf-like organ that forms during rice embryogenesis. Many OsCYO1 mutant lines defective in RNA interference had green leaves, however, three mutant lines had not only albino coleoptile but also albino leaves. Those having green leaves reduced photosynthetic performance in leaves. Our results demonstrate that OsCYO1 is enzymatically equivalent to AtCYO1 but that the physiological role of OsCYO1 in monocotyledonous plants may differ from that of AtCYO1 in dicotyledonous plants. (C) 2016 Elsevier GmbH. All rights reserved.

    DOI: 10.1016/j.jplph.2016.10.005

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  • A Mutation in GIANT CHLOROPLAST Encoding a PARC6 Homolog Affects Spikelet Fertility in Rice Reviewed

    Peter K. Kamau, Shingo Sano, Tsuneaki Takami, Ryo Matsushima, Masahiko Maekawa, Wataru Sakamoto

    PLANT AND CELL PHYSIOLOGY   56 ( 5 )   977 - 991   2015.5

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    Language:English   Publishing type:Research paper (scientific journal)   Publisher:OXFORD UNIV PRESS  

    Chloroplasts are not generated de novo but proliferate from a pre-existing population of plastids present in meristematic cells. Chloroplast division is executed by the co-ordinated action of at least two molecular machineries: internal machinery located on the stromal side of the inner envelope membrane and external machinery located on the cytosolic side of the outer envelope membrane. To date, molecular studies of chloroplast division in higher plants have been limited to several species such as Arabidopsis. To elucidate chloroplast division in rice, we performed forward genetics and isolated a mutant displaying large chloroplasts among an ethyl methanesulfonate (EMS)-mutagenized Oryza sativa spp japonica Nipponbare population. Using a map-based approach, this mutation, termed giant chloroplast (gic), was allocated in a gene that encodes a protein that is homologous to Paralog of ARC6 (PARC6), which is known to play a role in chloroplast division. GIC is unique in that it has a long C-terminal extension that is not present in other PARC6 homologs. Characterization of gic phenotypes in a rice field showed that gic exhibited defective growth in seed setting, suggesting that the gic mutant negatively affects the reproductive stage. This report is the first describing a chloroplast division mutant in monocotyledons and its effect on plant development.

    DOI: 10.1093/pcp/pcv024

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  • Guard Cell Chloroplasts Are Essential for Blue Light-Dependent Stomatal Opening in Arabidopsis Reviewed

    Noriyuki Suetsugu, Tsuneaki Takami, Yuuta Ebisu, Harutaka Watanabe, Chihoko Iiboshi, Michio Doi, Ken-ichiro Shimazaki

    PLOS ONE   9 ( 9 )   2014.9

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    Blue light (BL) induces stomatal opening through the activation of H+-ATPases with subsequent ion accumulation in guard cells. In most plant species, red light (RL) enhances BL-dependent stomatal opening. This RL effect is attributable to the chloroplasts of guard cell, the only cells in the epidermis possessing this organelle. To clarify the role of chloroplasts in stomatal regulation, we investigated the effects of RL on BL-dependent stomatal opening in isolated epidermis, guard cell protoplasts, and intact leaves of Arabidopsis thaliana. In isolated epidermal tissues and intact leaves, weak BL superimposed on RL enhanced stomatal opening while BL alone was less effective. In guard cell protoplasts, RL enhanced BL-dependent H+-pumping and DCMU, a photosynthetic electron transport inhibitor, eliminated this effect. RL enhanced phosphorylation levels of the H+-ATPase in response to BL, but this RL effect was not suppressed by DCMU. Furthermore, DCMU inhibited both RL-induced and BL-dependent stomatal opening in intact leaves. The photosynthetic rate in leaves correlated positively with BL-dependent stomatal opening in the presence of DCMU. We conclude that guard cell chloroplasts provide ATP and/or reducing equivalents that fuel BL-dependent stomatal opening, and that they indirectly monitor photosynthetic CO2 fixation in mesophyll chloroplasts by absorbing PAR in the epidermis.

    DOI: 10.1371/journal.pone.0108374

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  • Nucleases in higher plants and their possible involvement in DNA degradation during leaf senescence Reviewed

    Wataru Sakamoto, Tsuneaki Takami

    JOURNAL OF EXPERIMENTAL BOTANY   65 ( 14 )   3835 - 3843   2014.7

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    Language:English   Publisher:OXFORD UNIV PRESS  

    During leaf senescence, macromolecules such as proteins and lipids are known to be degraded for redistribution into upper tissues. Similarly, nucleic acids appear to undergo fragmentation or degradation during senescence, but the physiological role of nucleic acid degradation, particularly of genomic DNA degradation, remains unclear. To date, more than a dozen of plant deoxyribonucleases have been reported, whereas it remains to be verified whether any of them degrade DNA during leaf senescence. This review summarizes current knowledge related to the plant nucleases that are induced developmentally or in a tissue-specific manner and are known to degrade DNA biochemically. Of these, several endonucleases (BFN1, CAN1, and CAN2) and an exonuclease (DPD1) in Arabidopsis seem to act in leaf senescence because they were shown to be inducible at the transcript level. This review specifically examines DPD1, which is dual-targeted to chloroplasts and mitochondria. Results show that, among the exonuclease family to which DPD1 belongs, DPD1 expression is extraordinary when estimated using a microarray database. DPD1 is the only example among the nucleases in which DNA degradation has been confirmed in vivo in pollen by mutant analysis. These data imply a significant role of organelle DNA degradation during leaf senescence and implicate DPD1 as a potential target for deciphering nucleotide salvage in plants.

    DOI: 10.1093/jxb/eru091

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  • De novo biosynthesis of fatty acids is important for maintenance of photochemical activity under low temperature environments in arabidopsis Reviewed

    Tsuneaki Takami, Masaru Shibata, Yoshichika Kobayashi, Toshiharu Shikanai

    Advanced Topics in Science and Technology in China   625 - 627   2013.1

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    © Zhejiang University Press, Hangzhou and Springer-Verlag Berlin Heidelberg 2013. The Arabidopsis thaliana kas3 mutant was isolated based on its hypersensitivity of photosystem (PS) II to low temperature using a chlorophyll (Chl) fluorescence imaging system. Chl content was lower in kas3 seedlings cultured at 23 °C than in the wild type, but maximum PSII activity was only mildly affected. We also clarified that the activity and levels of photosynthetic electron transport machinery were reduced after chilling treatment. The kas3 mutation causes an amino acid alteration in 3-ketoacyl-ACP synthase III (KasIII) which catalyzes the first decarboxy condensation step in de novo fatty biosynthesis in plastids. The defect in KasIII led to the partial loss of the de novo synthesis pathway for fatty acids in plastids. Consequently, the total fatty acid level was reduced to 75% of the wild-type level in kas3 at 23 °C and was further reduced to 60% at 4 °C. The full activity of KasIII is required for the biogenesis of intact photosynthetic machinery in thylakoid membranes and is especially important for the process responding to low temperature.

    DOI: 10.1007/978-3-642-32034-7_136

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  • Subfunctionalization of Sigma Factors during the Evolution of Land Plants Based on Mutant Analysis of Liverwort (Marchantia polymorpha L.) MpSIG1 Reviewed

    Minoru Ueda, Tsuneaki Takami, Lianwei Peng, Kimitsune Ishizaki, Takayuki Kohchi, Toshiharu Shikanai, Yoshiki Nishimura

    GENOME BIOLOGY AND EVOLUTION   5 ( 10 )   1836 - 1848   2013

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    Language:English   Publishing type:Research paper (scientific journal)   Publisher:OXFORD UNIV PRESS  

    Sigma factor is a subunit of plastid-encoded RNA polymerase that regulates the transcription of plastid-encoded genes by recognizing a set of promoters. Sigma factors have increased in copy number and have diversified during the evolution of land plants, but details of this process remain unknown. Liverworts represent the basal group of embryophytes and are expected to retain the ancestral features of land plants. In liverwort (Marchantia polymorpha L.), we isolated and characterized a T-DNA-tagged mutant (Mpsig1) of sigma factor 1 (MpSIG1). The mutant did not show any visible phenotypes, implying that MpSIG1 function is redundant with that of other sigma factors. However, quantitative reverse-transcription polymerase chain reaction and RNA gel blot analysis revealed that genes related to photosynthesis were downregulated, resulting in the minor reduction of some protein complexes. The transcript levels of genes clustered in the petL, psaA, psbB, psbK, and psbE operons of liverwort were lower than those in the wild type, a result similar to that in the SIG1 defective mutant in rice (Oryza sativa). Overexpression analysis revealed primitive functional divergence between the SIG1 and SIG2 proteins in bryophytes, whereas these proteins still retain functional redundancy. We also discovered that the predominant sigma factor for ndhF mRNA expression has been diversified in liverwort, Arabidopsis (Arabidopsis thaliana), and rice. Our study shows the ancestral function of SIG1 and the process of functional partitioning (subfunctionalization) of sigma factors during the evolution of land plants.

    DOI: 10.1093/gbe/evt137

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  • De Novo Biosynthesis of Fatty Acids Plays Critical Roles in the Response of the Photosynthetic Machinery to Low Temperature in Arabidopsis Reviewed

    Tsuneaki Takami, Masaru Shibata, Yoshichika Kobayashi, Toshiharu Shikanai

    PLANT AND CELL PHYSIOLOGY   51 ( 8 )   1265 - 1275   2010.8

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    Language:English   Publishing type:Research paper (scientific journal)   Publisher:OXFORD UNIV PRESS  

    The Arabidopsis thaliana kas3 mutant was isolated based on the hypersensitivity of PSII to low temperature using a Chl fluorescence imaging technique. Chl content was lower in kas3 seedlings cultured at 23 degrees C than in the wild type, but PSII activity was only mildly affected. However, after the chilling treatment at 4 degrees C for 7 d, PSII activity was severely impaired in kas3. PSII was more sensitive to light at 4 degrees C in the presence of lincomycin, suggesting that the kas3 mutation accelerates at least the PSII photodamage. The kas3 mutation causes an amino acid alteration in 3-ketoacyl-ACP synthase III (KasIII), leading to the partial loss of the de novo synthesis pathway for fatty acids in plastids. Consequently, the total fatty acid level was reduced to 75% of the wild-type level in kas3 at 23 degrees C and was further reduced to 60% at 4 degrees C. The composition of fatty acids was also slightly affected in kas3 at both 4 and 23 degrees C. Consistent with the results of the electron transport analysis, the chilling treatment also destabilized PsaA and cytochrome (Cyt) f and D1 in kas3. An analysis of double mutants with pgr1 conditionally defective in Cyt b(6)f activity and with var2 defective in FtsH protease suggested that the kas3 mutation has pleiotropic effects on chloroplast function, probably impacting both the Cyt b(6)f activity and translation in chloroplasts at 23 degrees C. The full activity of KasIII is required for the biogenesis of the intact electron transport machinery in thylakoid membranes and is especially important for the process of responding to low temperature.

    DOI: 10.1093/pcp/pcq085

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  • Arabidopsis CFD is an ortholog of Chlamydomonas Ccs1 that is required for c-type heme assembly in chloroplasts Reviewed

    Tsuneaki Takami, Yoshichika Kobayashi, Toshiharu Shikanai

    PLANT BIOTECHNOLOGY   27 ( 5 )   401 - 408   2010

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    The Arabidopsis thaliana cfd (cytochrome f deficient) mutant was isolated by the sensitivity of its photosystem II to low temperature using a chlorophyll fluorescence imaging technique. The cfd mutant is defective in intersystem electron transport even at 23 degrees C, secondarily leading to photodamage of PSII at 4 degrees C. Map-based cloning revealed that the cfd phenotype is due to a mutation in At1g49380, which encodes a putative plastid-targeting protein with high similarity to Ccs1 in Chlamydomonas reinhardtii. Ccs1 is required for c-type cytochrome (Cyt) assembly in chloroplasts. Consistent with the high sequence similarity of At1g49380 and Ccs1, the levels of Cyt f heme and Cyt f were low in the cfd mutant. We conclude that CFD is an ortholog of Chlamydomonas Ccs1. In vitro ferredoxin-dependent plastoquinone reduction activity was not affected in cfd, suggesting that system II c-type Cyt biogenesis is required for the machinery of photosystem I cyclic electron transport.

    DOI: 10.5511/plantbiotechnology.10.0614a

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  • Efficient Operation of NAD(P)H Dehydrogenase Requires Supercomplex Formation with Photosystem I via Minor LHCI in Arabidopsis Reviewed

    Lianwei Peng, Yoichiro Fukao, Masayuki Fujiwara, Tsuneaki Takami, Toshiharu Shikanai

    PLANT CELL   21 ( 11 )   3623 - 3640   2009.11

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    Language:English   Publishing type:Research paper (scientific journal)   Publisher:AMER SOC PLANT BIOLOGISTS  

    In higher plants, the chloroplast NAD(P)H dehydrogenase (NDH) complex mediates photosystem I (PSI) cyclic and chlororespiratory electron transport. We reported previously that NDH interacts with the PSI complex to form a super-complex (NDH-PSI). In this study, NDH18 and FKBP16-2 (FK506 Binding Protein 16-2), detected in the NDH-PSI super-complex by mass spectrometry, were shown to be NDH subunits by the analysis of their knockdown lines. On the basis of extensive mutant characterization, we propose a structural model for chloroplast NDH, whereby NDH is divided into four subcomplexes. The subcomplex A and membrane subcomplex are conserved in cyanobacteria, but the subcomplex B and lumen subcomplex are specific to chloroplasts. Two minor light-harvesting complex I proteins, Lhca5 and Lhca6, were required for the full-size NDH-PSI supercomplex formation. Similar to crr pgr5 double mutants that completely lack cyclic electron flow activity around PSI, the lhca6 pgr5 double mutant exhibited a severe defect in growth. Consistent with the impaired NDH activity, photosynthesis was also severely affected in mature leaves of lhca6 pgr5. We conclude that chloroplast NDH became equipped with the novel subcomplexes and became associated with PSI during the evolution of land plants, and this process may have facilitated the efficient operation of NDH.

    DOI: 10.1105/tpc.109.068791

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  • Role of the low-molecular-weight subunits PetL, PetG, and PetN in assembly, stability, and dimerization of the cytochrome b(6)f complex in tobacco(1[C]) Reviewed

    Serena Schwenkert, Julia Legen, Tsuneaki Takami, Toshiharu Shikanai, Reinhold G. Herrmann, Joerg Meurer

    PLANT PHYSIOLOGY   144 ( 4 )   1924 - 1935   2007.8

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    The cytochrome b(6)f (Cyt b6f) complex in flowering plants contains nine conserved subunits, of which three, PetG, PetL, and PetN, are bitopic plastid-encoded low-molecular-weight proteins of largely unknown function. Homoplastomic knockout lines of the three genes have been generated in tobacco (Nicotiana tabacum 'Petit Havana') to analyze and compare their roles in assembly and stability of the complex. Deletion of petG or petN caused a bleached phenotype and loss of photosynthetic electron transport and photoautotrophy. Levels of all subunits that constitute the Cyt b6f complex were faintly detectable, indicating that both proteins are essential for the stability of the membrane complex. In contrast, Delta petL plants accumulate about 50% of other Cyt b6f subunits, appear green, and grow photoautotrophically. However, Delta petL plants show increased light sensitivity as compared to wild type. Assembly studies revealed that PetL is primarily required for proper conformation of the Rieske protein, leading to stability and formation of dimeric Cyt b(6)f complexes. Unlike wild type, phosphorylation levels of the outer antenna of photosystem II (PSII) are significantly decreased under state II conditions, although the plastoquinone pool is largely reduced in Delta petL, as revealed by measurements of PSI and PSII redox states. This confirms the sensory role of the Cyt b(6)f complex in activation of the corresponding kinase. The reduced light-harvesting complex II phosphorylation did not affect state transition and association of light-harvesting complex II to PSI under state II conditions. Ferredoxin-dependent plastoquinone reduction, which functions in cyclic electron transport around PSI in vivo, was not impaired in Delta petL.

    DOI: 10.1104/pp.107.100131

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  • Molecular genetical study on the adaptation strategy of plants to fluctuating environments Reviewed

    Takami Tsuneaki, Kobayashi Yoshichika, Shikanai Toshiharu

    PLANT AND CELL PHYSIOLOGY   48   S179   2007

  • Accumulation of menaquinones with incompletely reduced side chains and loss of α-tocopherol in rice mutants with alternations in the chlorophyll moiety Reviewed

    Masaru Shibata, Michito Tsuyama, Tsuneaki Takami, Hideyuki Shimizu, Yoshichika Kobayashi

    Journal of Experimental Botany   55 ( 405 )   1989 - 1996   2004.9

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    The rice mutants M249 and M134 accumulate chlorophyllides a and b which are esterified with incompletely reduced alcohols such as geranylgeraniol, dihydrogeranylgeraniol, and tetrahydrogeranylgeraniol. Quantities of α-tocopherol, phylloquinone, and menaquinones in leaves of these mutants were determined by high performance liquid chromatography (HPLC) with a fluorescence detector after post-column chemical reduction to convert quinones to fluorescent quinols. Methylnaphthoquinones, varying in the reduction state of the side chain (menaquinones), were detected in leaf segments of the rice mutants on HPLC analyses with both high selectivity and sensitivity to plant quinones. Mutant M249 preferentially accumulated menaquinone, which contains tetrahydrogeranylgeraniol as its side chain. However, mutant M134 exhibited preferential accumulation of menaquinone with a geranylgeraniol side chain. In both mutants, the accumulation patterns of menaquinones with different prenyl side chains were similar to those of chlorophyll with the corresponding prenyl side chains. The content of P700, the photosystem I primary electron donor, in the wild type was greater than that of either mutant, on both a chlorophyll and a fresh weight basis. However, the ratios of total methylnaphthoquinones to P700 were similar in both the wild type and the mutants. Since no comparative large differences in photosynthetic activity exist between the wild type and the mutants, these results suggest that the hydrogenation of the methylnaphthoquinone side chain to phytol is not an essential requirement for it to function as an electron acceptor in photosystem I. On the other hand, α-tocopherol was detected in fully developed leaves of the wild type, but not in those of the mutants. Accumulation of menaquinones and the loss of α-tocopherol in mutant leaves suggest that the reduction of chlorophyll-geranylgeraniol to phytol and that of geranylgeranyl pyrophosphate to phytyl pyrophosphate are catalysed by the same enzyme.

    DOI: 10.1093/jxb/erh218

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MISC

  • Molecular genetic analysis of the rice stay-green mutant dye1

    YAMATANI Hiroshi, KOHZUMA Kaori, NAKANO Michiharu, TAKAMI Tsuneaki, KATO Yusuke, HAYASHI Yoriko, MONDEN Yuki, OKUMOTO Yutaka, ABE Tomoko, KUMAMARU Toshihiro, TANAKA Ayumi, SAKAMOTO Wataru, KUSABA Makoto

    日本植物生理学会年会(Web)   59th   ROMBUNNO.P.202   2018

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  • イネstay‐green突然変異体dcd1の分子遺伝学的解析

    山谷浩史, 上妻馨梨, 中野道治, 林依子, 高見常明, 加藤裕介, 門田有希, 熊丸敏博, 奥本裕, 坂本亘, 坂本亘, 阿部知子, 草場信, 草場信

    育種学研究   18   196   2016.9

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  • ゼニゴケ葉緑体RNAポリメラーゼシグマ因子(MpSIG1)の機能解析から明らかとなった陸上植物進化におけるシグマ因子の機能分化 Reviewed

    上田 実, 高見 常明, Peng Lianwei, 鹿内 利治, 西村 芳樹

    日本植物生理学会シンポジウム、第52回年会、於 京都産業大学、2012年3月   2013

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  • ゼニゴケ葉緑体RNAポリメラーゼシグマ因子(Mpsig1)変異体の解析から明らかとなった陸上植物シグマ因子の機能分化 Reviewed

    上田 実, 高見 常明, Peng Lianwei, 石崎 公庸, 河内 孝之, 鹿内 利治, 西村 芳樹

    日本分子生物学会、第35回年会、於 パシフィコ横浜、2011年12月   2011

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  • SEASONAL CHANGE IN CAROTENE CONTENTS & ITS COMPONENTS IN TREE LEAVES :

    OGURA Ayumi, NAKAMURA Maiko, TAKAMI Tsuneaki, SHIBATA Masaru

    Plant and cell physiology   42   s128   2001

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    Language:English   Publisher:Japanese Society of Plant Physiologists  

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    Other Link: https://projects.repo.nii.ac.jp/?action=repository_uri&item_id=184966

  • QUINONE BINDING PROTEIN (S) IN STROMA :

    SHIBATA Masaru, HASEGAWA Kenmu, OGURA Ayumi, TAKAMI Tsuneaki

    Plant and cell physiology   42   s129   2001

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    Other Link: https://projects.repo.nii.ac.jp/?action=repository_uri&item_id=184967

  • SEASONAL CHANGE IN α-TOCOPHEROL & ASCORBATES IN THE TREE GROWN IN THE HOKURIKU REGION :

    TAKAMI Tsuneaki, NAKAJIMA Takamichi, OGURA Ayumi, SHIBATA Masaru

    Plant and cell physiology   42   s128   2001

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    Other Link: https://projects.repo.nii.ac.jp/?action=repository_uri&item_id=184965

  • Measurements of plant quinones by post-column reduction high performance liquid chromatography

    Shibata Masaru, Ogura Ayumi, Takami Tsuneaki

    Research reports of the Nagaoka Technical College   36 ( 2 )   53 - 59   2000.11

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    Publisher:長岡工業高等専門学校  

    Measurements of naphthoquinones and plastoquinones are carried out by high performance liquid chromatography (HPLC) with a spectrophotometric detector. However, this method lack both selectivity and sensitivity, and quinones measurements require concentrating extract and removing substances strongly absorbing ultraviolet light as chlorophylls and carotenoids from quinone extract. Therefore, HPLC method with fluorescence detection after post-column chemical reduction was developed for measurements of phylloquinone (PK), menaquinone (MK), plastoquinone A-45 (PQ)and tocopheryl quinone (TQ) in leaf segments without the pretreatment as removing chlorophylls from quinone extracts. The quinone derivatives extracted from leaves were separated by reversed-phase C18 column at 35℃ with a mixture of equivalent volume of methanol and ethanol as a mobile phase at a flow rate of 1.0ml/min. Separated naphthoquinone derivatives were detected by monitoring fluorescence intensity at 430 nm of quinoles excited at 320 nm with a fluorescence detector after reaction with ethanolic sodium borohydride of 0.045% (W/V) at a flow rate of 1.0 ml/min in a reaction coil (0.5mm i.d. x 200cm) kept at 35℃ connected online chromatographic column. Tocophery quinone and plastoquinone were detected by measuring fluorescence(Ex=290nm, Em=320nm)of the quinone derivatives, the other separation and reduction conditions except for fluorescence detection is the same as in naphthoquinone analysis. The calibration curves constructed by plotting the peak area against the amount of standard quinone/-ol were linear over the tested range from 7.5 to 2000 pmol. The proposed method is simpler, more specific snd sensitive than other conventional methods.

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Research Projects

  • 植物の老化過程における葉緑体DNA分解の生理的意義の解明

    Grant number:21K06230  2021.04 - 2024.03

    日本学術振興会  科学研究費助成事業  基盤研究(C)

    高見 常明

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    Grant amount:\4160000 ( Direct expense: \3200000 、 Indirect expense:\960000 )

    葉緑体は非常に多くのDNAを持ち、かつそのコピー数が組織により変動または消失することも報告されている。これは何らかの理由で組織特異的に分解されることを示唆している。「花粉のオルガネラDNAが分解されない」dpd1変異体はオルガネラヌクレアーゼDPD1の機能を欠損しており、葉緑体DNA分解は抑制され老化の遅延が認められる。これは葉緑体DNA分解されることで適切に葉の老化が進行することを示唆している。本研究では植物が老化するために葉緑体DNAを分解する生理的意義を明らかにすることを目的している。
    本年度はdpd1変異体の老化過程における表現型を再評価する目的で早期老化の表現型を示すオートファジーの変異体であるatg5変異体とatg7変異体との二重変異体の表現型解析を行なった。その結果、DPD1が欠損することで特にatg5変異体の示す早期老化の表現型が抑制されることがわかった。この結果を踏まえてトランスクリプトーム解析を行い早期老化の抑制機構を遺伝子発現の側面から明らかにしようと試みた。これまでに約800遺伝子が抑制に関連していることを見出している。この成果により、植物の老化制御に関わる新規な遺伝子が単離されることが期待される。またDPD1はDNAを分解する酵素であることから、DNAの分解産物がシグナル因子として機能しているという作業仮説を立て代謝産物解析をCE-MSにより行なった。予想通り核酸代謝において野生株とdpd1変異体の間で違いが確認された。

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  • Integrative studies on the processive degradation of macromolecules in chloroplasts

    Grant number:17H03699  2017.04 - 2021.03

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research  Grant-in-Aid for Scientific Research (B)

    SAKAMOTO Wataru

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    Grant amount:\17550000 ( Direct expense: \13500000 、 Indirect expense:\4050000 )

    Chloroplasts in land plants, which originate from endosymbiosis of cyanobacteria, are the organelles that develop thylakoid membranes in response to light and are responsible not only for the synthesis of photosynthates but also for the synthesis of various compounds like lipids, amino acids and phytohormones. As a site of light energy conversion, chloroplasts are susceptible to damage caused by excess light, and the quality control and environmental adaptation functions related to chloroplast maintenance also have a significant impact on plant growth. Our previous studies have revealed the importance of the processive degradation of macromolecules such as proteins and nucleic acids for chloroplast homeostasis. In this study, we conducted genetic and physiological studies to understand the new functions of chloroplasts through these processive degradation mechanisms.

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  • Elucidating salvaging role of tissue-specific organelle DNA degradation conserved in land plants

    Grant number:25291063  2013.04 - 2016.03

    Japan Society for the Promotion of Science  Grants-in-Aid for Scientific Research  Grant-in-Aid for Scientific Research (B)

    SAKAMOTO Wataru, Tsuneaki TAKAMI

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    Grant amount:\17940000 ( Direct expense: \13800000 、 Indirect expense:\4140000 )

    Chloroplasts and mitochondria are the organelles that originate from endosymbiosis of respective ancestral bacteria and retain their own DNA as a remnant. Although these organelle DNAs are very limited as genetic content, they exist as multi-copy and vary in the amount. Moreover, tissue-specific degradation of organelle DNAs has been reported in literature since two decades ago but little is understood at the molecular level. Recently, our group identified DPD1 exonuclease, which is conserved in land plants, be dual targeted to plastids and mitochondria, and appear to degrade organelle DNA.
    In this study, we attempted to corroborate the role of DPD1 in organelle DNA degradation. We focused on leaf senescence and examine the possibility that organelle DNA degradation is related to nutrient salvage.

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