Faculty Profiles - USHIJIMA Koichiro

MISC - USHIJIMA Koichiro

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Evolutionary dynamics of giant sex chromosomes in the genus Silene

赤木剛士, 藤田尚子, 増田佳苗, 白澤健太, 長岐清孝, 堀内綾乃, 桑田恵理子, 久能理子, 中村光希, 池田陽子, 牛島幸一郎, CHARLESWORTH Deborah

育種学研究 26 2024

Population structure analysis and GWAS of fruit shape traits in hexaploid persimmon cultivars

堀内綾乃, 堀内綾乃, 尾上典之, 松崎隆介, 南川舞, 西村和紗, 白澤健太, 久保康隆, 牛島幸一郎, 赤木剛士

育種学研究 26 2024

GWASによる六倍体カキ品種群の果実形状多様性機構の解明に向けて

堀内綾乃, 堀内綾乃, 尾上典之, 南川舞, 西村和紗, 白澤健太, 久保康隆, 牛島幸一郎, 赤木剛士

日本分子生物学会年会プログラム・要旨集(Web) 47th 2024

Chromosome-scale genome assembly of a persimmon cv. Taishu revealed rapid evolution of a post-Y chromosome

堀内綾乃, 増田佳苗, 白澤健太, 尾上典之, 藤田尚子, 牛島幸一郎, 赤木剛士

園芸学研究別冊 22 ( 1 ) 2023

Recurrent neo-sex chromosome evolution in the genus Actinidia (II)

赤木剛士, 赤木剛士, VARKONYI-GASIC Erika, 白澤健太, CATANACH Andrew, HENRY Isabelle M., MERTTEN Daniel, DATSON Paul, 増田佳苗, 藤田尚子, 桑田恵理子, 牛島幸一郎, 別府賢治, ALLAN Andrew C., CHARLESWORTH Deborah, 片岡郁雄

園芸学研究別冊 22 ( 1 ) 2023

Silene属植物の全ゲノム比較解析から性の成立過程を紐解く

藤田尚子, 白澤健太, 牛島幸一郎, 赤木剛士

Plant Morphology 35 ( 1 ) 2023

Silene属の全ゲノム比較進化解析から紐解く性染色体と性決定因子群の成立

藤田尚子, 白澤健太, 牛島幸一郎, 赤木剛士

日本植物学会大会研究発表記録(CD-ROM) 86th 2022

Recurrent neo-sex chromosome evolution in the genus Actinidia (I)

赤木剛士, 赤木剛士, VARKONYI-GASIC Erika, 白澤健太, CATANACH Andrew, HENRY Isabelle M., DATSON Paul, 増田佳苗, 藤田尚子, 桑田恵理子, 牛島幸一郎, 別府賢治, ALLAN Andrew C., COMAI Luca, CHARLESWORTH Deborah, 片岡郁雄

園芸学研究別冊 21 ( 2 ) 2022

Population genetic analysis for fruit shape diversity specific to hexaploid persimmon cultivars

堀内綾乃, 増田佳苗, 増田佳苗, 尾上典之, 松崎隆介, 白澤健太, 久保康隆, 牛島幸一郎, 赤木剛士

園芸学研究別冊 21 ( 2 ) 2022

Comparative genome analysis of two Silene species with and without sex chromosomes

藤田尚子, 白澤健太, 牛島幸一郎, 赤木剛士

園芸学研究別冊 21 ( 2 ) 2022

Prediction and premonitory symptoms characterization for rapid over-softening in persimmon fruit, with deep learning

鈴木茉莉亜, 増田佳苗, 杉浦真由, 鈴木哲也, 新川猛, 久保康隆, 牛島幸一郎, 内田誠一, 赤木剛士, 赤木剛士

園芸学研究別冊 21 ( 2 ) 2022

Variety differentiation in hexaploid persimmon, with a wide fruit shape diversity

堀内綾乃, 増田佳苗, 増田佳苗, 尾上典之, 松崎隆介, 白澤健太, 久保康隆, 牛島幸一郎, 赤木剛士

育種学研究 24 2022

Comparative analysis on somaclonal mutants for fruit shape determination in persimmon

堀内綾乃, 増田佳苗, 松崎隆介, 尾上典之, 久保康隆, 牛島幸一郎, 赤木剛士

育種学研究 24 2022

Characterization of Fruit Enlargement and Ripening in Extremely Late Maturing Peach

20 ( 1 ) 65 - 71 2021.1

The genetic control and transcriptome analyses of the slow softening strain of melon

合田駿平, 池田和生, 小林和真, 赤木剛士, 加藤鎌司, 久保康隆, 中野龍平, 牛島幸一郎

園芸学研究別冊 20 ( 1 ) 2021

A candidate gene responsible for susceptibility to the host-specific toxin of Alternaria alternata pathotype peach

浅野貴洋, 河井崇, 鵜木悠治郎, 日原誠介, 白澤健太, 赤木剛士, 久保康隆, 高田大輔, 中野龍平, 福田文夫, 山本幹博, 牛島幸一郎

園芸学研究別冊 20 ( 2 ) 2021

Genome-wide survey of cis-motifs responsible for fruit ripening in kiwifruit, with explainable deep learning

桑田恵理子, 竹下孔喜, 藤田尚子, 牛島幸一郎, 久保康隆, 別府賢治, 片岡郁雄, 内田誠一, 赤木剛士, 赤木剛士

園芸学研究別冊 20 ( 2 ) 2021

Genome-wide cis-decoding for expression designing in tomato using explainable deep learning

赤木剛士, 赤木剛士, 増田佳苗, 桑田恵理子, 竹下孔喜, 川勝泰二, 有泉亨, 久保康隆, 牛島幸一郎, 内田誠一

園芸学研究別冊 20 ( 2 ) 2021

Prediction of enriched small RNA sequences with deep learning for application to horticultural crops

榎那津美, 増田佳苗, 久保康隆, 牛島幸一郎, 内田誠一, 赤木剛士, 赤木剛士

園芸学研究別冊 20 ( 2 ) 2021

Prediction and premonitory symptoms characterization for rapid over-softening in persimmon fruit, with deep learning

鈴木茉莉亜, 増田佳苗, 竹下孔喜, 朝隈英昭, 杉浦真由, 鈴木哲也, 新川猛, 久保康隆, 牛島幸一郎, 内田誠一, 赤木剛士, 赤木剛士

園芸学研究別冊 20 ( 2 ) 2021

Comparative analysis for persimmon fruit shape determination in ‘Hiratanenashi’ and the bud sport ‘Koushimaru’

堀内綾乃, 増田佳苗, 松崎隆介, 尾上典之, 久保康隆, 牛島幸一郎, 赤木剛士

園芸学研究別冊 20 ( 2 ) 2021

Reinvention of hermaphroditism triggered by activation of a RADIALIS-like gene in hexaploid persimmon

増田佳苗, 池田陽子, 松浦恭和, 川勝泰二, 田尾龍太郎, 久保康隆, 牛島幸一郎, HENRY Isabelle M., 赤木剛士, 赤木剛士

園芸学研究別冊 20 ( 2 ) 2021

Inheritance of ultra-late maturing trait of ‘Fuyumomogatari’ peach in F₁ progeny

河井崇, 牛島幸一郎, 三宅春菜, 草加芽依, 深松陽介, 原美由紀, 鵜木悠治郎, 日原誠介, 中野龍平, 小田賢司, 福田文夫

園芸学研究別冊 19 ( 1 ) 2020

性の可塑化を規定する遺伝子ネットワーク:六倍体カキにおける両性花派生機構

増田佳苗, 牛島幸一郎, 久保康隆, 赤木剛士

日本植物学会大会研究発表記録(CD-ROM) 84th 2020

Polyploid-specific reinvention of hermaphroditism in persimmon is triggered by stress-induced NGATHA

増田佳苗, 牛島幸一郎, 久保康隆, 赤木剛士

育種学研究 22 2020

カキ品種の果実生育・成熟に関する倍数体用ゲノムワイドアソシエーション解析

赤木剛士, 増田佳苗, 牛島幸一郎, 久保康隆

園芸学研究別冊 18 ( 2 ) 2019

カキの両性花派生に関する共発現ネットワーク解析

増田佳苗, 牛島幸一郎, 久保康隆, 田尾龍太郎, 赤木剛士

園芸学研究別冊 18 ( 2 ) 2019

‘香粋’キウイフルーツにおける芳香成分と一次代謝産物のGC/MSによる解析

常盤淑玲, 笠原有加, 土佐康彰, MITALO Witere Oscar, 近藤憂紀, 大槻巧, 大地菜摘, AZIMI Azimullah, DOAN Anh Thu, GALIS Ivan, 中野龍平, 中野龍平, 牛島幸一郎, 牛島幸一郎, 久保康隆, 久保康隆

園芸学研究別冊 17 ( 2 ) 2018

棚持ち性の良いメロン系統の交配後代における表現型の調査

岡本健, 上山美穂, 中西諒祐, 牛島幸一郎, 村上賢治, 加藤鎌司, 久保康隆, 中野龍平

園芸学研究別冊 15 ( 1 ) 2016

モモ晩生品種の香港中秋節時期に向けた輸出試験に関して

中野龍平, 岡村憲一, 荒木克也, 志水基修, 長谷川圭則, 藤井雄一郎, 荒木有朋, 樋野友之, 牛島幸一郎, 久保康隆, 森永邦久, 福田文夫

園芸学研究別冊 15 ( 1 ) 2016

棚持ち性の良いメロン系統のエチレン応答性に関する研究

岡本健, 中村智哉, 上山美穂, 浜田佳代子, 山岡達也, 牛島幸一郎, 村上賢治, 加藤鎌司, 久保康隆, 中野龍平

園芸学研究別冊 14 ( 2 ) 2015

ハミウリおよびその交配後代の棚持ち性に関する研究

岡本健, 中村智哉, 上山美穂, 山岡達也, 牛島幸一郎, 久保康隆, 加藤鎌司, 中野龍平

園芸学会中四国支部研究発表要旨 ( 54 ) 2015

マメガキを用いたカキの甘渋性決定遺伝子座の比較ゲノム解析

西山総一郎, 佐藤明彦, 河野淳, 尾上典之, 牛島幸一郎, 山根久代, 田尾龍太郎, 米森敬三

園芸学研究別冊 14 ( 2 ) 2015

メロン果実成熟過程におけるエチレンシグナル伝達系遺伝子の発現パターン

山岡達也, 中野龍平, 加藤鎌司, 久保康隆, 牛島幸一郎

園芸学研究別冊 11 ( 2 ) 2012

Subtraction analysis for cloning of hetelostyle related genes in Linum grandiflorum

BANDO M., KUBO Y., NAKANO R., USHIJIMA K.

7 ( 1 ) 406 - 406 2008.3

Coupling functional screen and macroarray for a comprehensive analysis of the secretomes associated with ripening-related changes in pear fruits

MWANIKI M. W., NAKANO R., USHIJIMA K., AOKI K., ROSE J. K. C., KUBO Y.

7 ( 1 ) 243 - 243 2008.3

Analysis of ripening-associated genes using tomato macroarray

KAMITAKA D., HARANO T., YOKOTANI N., NAKANO R., USIJIMA K., INABA A., KUBO Y.

6 ( 2 ) 405 - 405 2007.9

Studies on long-term storage of 'Sanuki-Gold' kiwi fruit

YOSHIKAWA T., MWORIA E., NAKANO R., USHIJIMA K., FUKUDA T., SUEZAWA K., KUBO Y.

6 ( 2 ) 401 - 401 2007.9

Characterization of ethylene biosynthesis and its regulation fruit ripening in Actinidia chinensis var. 'Sanuki Gold'

MWORIA E., YOSHIKAWA T., NAKANO R., USHIJIMA K., FUKUDA T., SUEZAWA K., KUBO Y.

6 ( 2 ) 403 - 403 2007.9

Expression pattern of ethylene responsible genes in 'Honey Dew' melon

NISHIYAMA K., NAKANO R., KATO K., INABA A., KUBO Y., USHIJIMA K.

6 ( 2 ) 404 - 404 2007.9

Phenotype analysis of transgenic tomato fruit with suppressed EIN3/EIL

HARANO T., CHAMITA D., YUCATAN N., NAKANO R., USHIJIMA K., INDABA A., KUBO Y.

6 ( 2 ) 649 - 649 2007.9

Characterization of cell wall proteins related with fruit softening in European pear

BANDO M., USHIJIMA K., NAKANO R., INABA A., KUBO Y.

6 ( 1 ) 289 - 289 2007.3

β-Galactosidase and α-L-Arabinofuranosidase Activities and Gene Expression in European and Chinese Pear Fruit During Ripening :

Mwaniki Mercy W., Mathooko Francis M., Hiwasa Kyoko, Tateishi Akira, Yokotani Naoki, Ushijima Koichiro, Nakano Ryohei, Inaha Akitsugu, Kubo Yasutaka

Journal of the Japanese Society for Horticultural Science 76 ( 1 ) 85 - 90 2007

Language：English Publisher：Japanese Society for Horticultural Science

Substantial decreases in cell wall bound galactosyl and arabinosyl residues are two of the most evident cell wall compositional changes that occur during fruit ripening. The roles of β-galactosidase (β-Gal) and α-L-arabinofuranosidase (α-Af), the enzymes responsible for these respective losses, were investigated and compared in European (Pyrus communis L. 'La France') and Chinese (Pyrus bretschneideri Rehd. 'Yali') pear fruits which exhibit different softening characteristics during ripening. The increase in the activities of β-Gal and α-Af during ripening in both types of pear fruit correlated well with an increase in climacteric ethylene production, and a concomitant decrease in flesh firmness in 'La France' fruit. However, there was no noticeable decrease in 'Yali' flesh firmness even after 28 days of storage at room temperature. In both fruit types, enzyme activity and the accumulation of transcripts hybridizing with PpGAL1, PpGAL4, PpARF2, and PcARF1 increased with fruit ripening. Increases in gene expression and enzyme activities in 'Yali' fruit with no detectable softening during ripening indicate that β-Gal and α-Af may not mediate difference in fruit softening between two pears, but that they could play some role(s) in cell wall changes, perhaps in cooperation with other cell wall-modifying enzymes such as polygalacturonase.

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Other Link： http://dl.ndl.go.jp/info:ndljp/pid/10471864

Comparative characterization of fruit development in 'Nakataniwase', 'Tonewase' and 'Hiratanenashi' Japanese persimmons and inhibition of postharvest fruit softening

SAGARA H., HARIMA S., NAKANO R., USHIJIMA K., KUBO Y., INABA A.

75 ( 2 ) 409 - 409 2006.9

The responsibility of ripening-related characteristics to ethylene in 'Honey Dew' melon

NISHIYAMA K., USHIJIMA K., KATO K., NAKANO R., INABA A., KUBO Y.

75 ( 2 ) 610 - 610 2006.9

メロン品種における果実成熟特性とエチレン関連遺伝子の発現

西山精視, 牛島幸一郎, 加藤鎌司, 稲葉昭次, 久保康隆

園芸学会雑誌別冊 75 ( 1 ) 2006

Comparison of fruit softening and expression pattern of polygalacturonase gene among four melon lines

NISHIYAMA K., MIYAZAKI T., USHIJIMA K., KATO K., INABA A., KUBO Y.

74 ( 2 ) 553 - 553 2005.10

Cloning and Expression of Ripening-related MADS Family Genes in Grape Berry

YAMANE M., OZAKI M., NAKANO R., USHIJIMA K., KUBO Y., INABA A.

74 ( 1 ) 383 - 383 2005.3

Expression of softening-related genes in melon fruit during ripening

NISHIYAMA K., MIYAZAKI T., USHIJIMA K., KATO K., INABA A., KUBO Y.

74 ( 1 ) 401 - 401 2005.3

Suppression of genetic recombination at S locus of sweet cherry

IKEDA K, USHIJIMA K, YAMANE H, IEZZONI Amy, TAO R

園芸学会雑誌. 別冊, 園芸学会大会研究発表 73 ( 2 ) 557 - 557 2004.9

Analysis of self-compatible S^f haplotype of Japanese apricot

KAKEHI E, USHIJIMA K, YAMANE H, TAO R

園芸学会雑誌. 別冊, 園芸学会大会研究発表 73 ( 2 ) 558 - 558 2004.9

β-galactosidase and arabinofuranosidase activities and gene expression in three types of pear fruit

MWANIKI M. W., MATHOOKO F. M., HIWASA K., TATEISHI A., USHIJIMA K., INABA A., KUBO Y.

73 ( 2 ) 517 - 517 2004.9

Molecular markers for the self-compatible S-4 '-haplotype, a pollen-part mutant in sweet cherry (Prunus avium L.)

K Ikeda, A Watari, K Ushijima, H Yamane, NR Hauck, AF Iezzoni, R Tao

JOURNAL OF THE AMERICAN SOCIETY FOR HORTICULTURAL SCIENCE 129 ( 5 ) 724 - 728 2004.9

Language：English Publisher：AMER SOC HORTICULTURAL SCIENCE

S-4' is a pollen-part mutant in sweet cherry (Prunus avium L.) that is extensively used to develop self-compatible cultivars. The S-4'-haplotype is known to have a functional stylar component and a nonfunctional pollen component. The pollen component in sweet cherry necessary for the specificity of the pollen reaction is believed to be an S-haplotype specific F-box protein gene, called SFB. This study describes two molecular markers that distinguish between SFB4 and SFB4' by taking advantage of a four base pair deletion in the mutant allele. The resulting polymerase chain reaction (PCR) products can either be separated directly on a polyacrylamide gel or they can be subjected to restriction enzyme digestion and the different sized products can be visualized on an agarose gel. The latter technique utilizes restriction sites created in the PCR products from the SFB4' allele, but not the SFB4 allele. Because the primer sets created differential restriction sites, these primer sets were termed dCAPS (derived cleaved amplified polymorphism sequence) markers. These molecular assays can be used to verify self-compatibility conferred by the S-4-haplotype.

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Primary structural features of the S haplotype-specific protein, SFB, in Prunus

IKEDA K, USHIJIMA K, YAMANE H, SASSA H, IEZZONI A. F, KOHN J. R, TAO R

園芸学会雑誌. 別冊, 園芸学会大会研究発表 73 ( 1 ) 180 - 180 2004.4

A mode of mutation in SFB of the self-compatible S^<4'> haplotype in sweet cherry

USHIJIMA K., IKEDA K., TAO R.

73 ( 1 ) 368 - 368 2004.4

dCAPS markers for the self-compatible S^<4'>-haplotype of sweet cherry

WATARI A., USHIJIMA K., TAO R.

73 ( 1 ) 369 - 369 2004.4

The S haplotype-specific F-box protein gene, SFB, is defective in self-compatible haplotypes of Prunus avium and P. mume

USHIJIMA K

Plant J 39 573 - 586 2004

Characterization of self-compatible S^4' haplotype of sweet cherry : 1. DNA blot analysis for the S haplotype-specific F-box protein gene (SFB)

IKEDA K, WATARI A, USHIJIMA K, YAMANE H, IEZZONI A. F, TAO R

園芸学会雑誌. 別冊, 園芸学会大会研究発表 72 ( 2 ) 291 - 291 2003.9

Linked to a Gene for S-RNase in Two Species of Cherry, Prununs cerasus and P. avium

YAMANE Hisayo, IKEDA Kazuo, USHIJIMA Koichiro, SASSA Hidenori, TAO Ryutaro

Plant and Cell Physiology 44 ( 7 ) 764 - 769 2003.7

Structural features of the Prunus Slocus

USHIJIMA K, SASSA H, YAMANE H, TAO R

園芸学会雑誌. 別冊, 園芸学会大会研究発表 72 ( 1 ) 155 - 155 2003.4

Identification of SFB, a candidate gene for the pollen-S, in self-incompatible Japanese apricot cultivars

YAMANE H., NAMBA A., USHIJIMA K., SASSA H., TAO R.

72 ( 1 ) 340 - 340 2003.4

Identification of the candidate gene for pollen S in cherry

YAMANE H., IKEDA K., USHIJIMA K., SASSA H., TAO R.

72 ( 1 ) 342 - 342 2003.4

Isolation and expression pattern analysis of the candidate for almond pollen S gene

USHIJIMA K., SASSA H., GRADZIEL Thomas M., DANDEKAR Abhaya M., TAO R.

71 ( 2 ) 489 - 489 2002.10

Characterization of the S-locus region of almond (Prunus dulcis): analysis of a somaclonal mutant and a cosmid contig for an S haplotype

USHIJIMA K.

Genetics 158 379 - 386 2001

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